Pairwise Alignments

Query, 564 a.a., N-acetylmuramoyl-L-alanine amidase from Magnetospirillum magneticum AMB-1

Subject, 417 a.a., putative amidase (VIMSS) from Escherichia coli BW25113

 Score =  167 bits (424), Expect = 6e-46
 Identities = 96/248 (38%), Positives = 152/248 (61%), Gaps = 12/248 (4%)

Query: 309 PPAPVQQQAAPVPTPSMESVAKAKDGVPVIVIDPGHGGVDPGATGVSGTYEKHITLAMAR 368
           PPA    Q+ P P  +       +D   VI++DPGHGG D GA G   T EK + L +AR
Sbjct: 171 PPA----QSGPQPGKA------GRDRPIVIMLDPGHGGEDSGAVGKYKTREKDVVLQIAR 220

Query: 369 ELKAMLERNGRYRVHLTRDRDVFIRLRERIAIARAQGADLFISLHADAVQSPQIRGLSVY 428
            L++++E+ G  +V++TR+ D+FI L+ R+A A+ Q ADLF+S+HADA  S Q  G SV+
Sbjct: 221 RLRSLIEKEGNMKVYMTRNEDIFIPLQVRVAKAQKQRADLFVSIHADAFTSRQPSGSSVF 280

Query: 429 TLS-RNASDAEAQALAEKENKADLIAGIDLTHESADVANILIDLAQRETMNRSAGFATEL 487
            LS + A+   A+ LA+ +N +DLI G+  + +   V + + D+ Q  T+  S  F   +
Sbjct: 281 ALSTKGATSTAAKYLAQTQNASDLIGGVSKSGDRY-VDHTMFDMVQSLTIADSLKFGKAV 339

Query: 488 VDEVGQEMDLLGNTHRFAGFAVLKAPDVPAVLVEMGYLSNESEEKMLRQPQYRARLAKSI 547
           ++++G+   L  N    AGFAVLKAPD+P++LVE  ++SN  EE+ L+   ++  +A+SI
Sbjct: 340 LNKLGKINKLHKNQVEQAGFAVLKAPDIPSILVETAFISNVEEERKLKTATFQQEVAESI 399

Query: 548 AKAVERFF 555
              ++ +F
Sbjct: 400 LAGIKAYF 407



 Score = 24.6 bits (52), Expect = 0.008
 Identities = 26/99 (26%), Positives = 45/99 (45%), Gaps = 17/99 (17%)

Query: 58  TRFVLDLSDQVAFKITPLAEPYRIAIDLSGADYSGP-GGISK------PW---GSVNSMH 107
           TR  ++ + Q+ +K   L+ P R+ +D+   + +    G++       P+     V    
Sbjct: 48  TRVTVESNRQLKYKQFALSNPERVVVDIEDVNLNSVLKGMAAQIRADDPFIKSARVGQFD 107

Query: 108 LDGGRIVLDLR---KPALVKSAFIIAPRDGMGHRLVVDL 143
               R+V +L+   KP L    F +AP  G   RLV+DL
Sbjct: 108 PQTVRMVFELKQNVKPQL----FALAPVAGFKERLVMDL 142