Pairwise Alignments

Query, 1022 a.a., error-prone DNA polymerase from Magnetospirillum magneticum AMB-1

Subject, 1160 a.a., DNA polymerase III subunit alpha (NCBI) from Escherichia coli BW25113

 Score =  394 bits (1011), Expect = e-113
 Identities = 305/1079 (28%), Positives = 507/1079 (46%), Gaps = 70/1079 (6%)

Query: 4    YAELQTLSNYTFLEGASHADELAITASALGLEAIAICDRNTLSGIVRAHVAAKAAGIRLV 63
            +  L+  S+Y+ ++G +    L   A+ALG+ A+AI D   L G+V+ + A   AGI+ +
Sbjct: 6    FVHLRVHSDYSMIDGLAKTAPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGAGIKPI 65

Query: 64   VGARLDLT------DGASLLCFPTDRAAYGRLSRLLTLGRRRAPKGECHLARAD-VAEHA 116
            VGA  ++       +   L     +   Y  L+ L++   +R       +   D + E  
Sbjct: 66   VGADFNVQCDLLGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDWLIELN 125

Query: 117  EGQILVL-----IAPDPLEEGFAAQLAE----WRTVVGDRLYLAATRRFRGDDGERLRVL 167
            EG IL+           L  G +A + E    +     DR +L   R  R D+   L   
Sbjct: 126  EGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFPDRYFLELIRTGRPDEESYLHAA 185

Query: 168  AGF----GIPLVATNDVLYHTPARRPLADVLTCIRQGTTLAAAGWALSAHGERHLKSPAE 223
                   G+P+VATNDV +   +     ++   I  G TL       +   +++++S  E
Sbjct: 186  VELAEARGLPVVATNDVRFIDSSDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYMRSEEE 245

Query: 224  MARLFAACPEALANGLEVVRRCRFSLDELAYEYPNEVAAGMDPQERLEILTRQGAARRYP 283
            M  LFA  PEALAN +E+ +RC  ++    Y  P      M  ++ L    ++G   R  
Sbjct: 246  MCELFADIPEALANTVEIAKRCNVTVRLGEYFLPQFPTGDMSTEDYLVKRAKEGLEERLA 305

Query: 284  RGVP---------PKVQAQLAHELALIRQLGFAPYFLTVHAIVAFAESRGI-LCQGRGSA 333
               P         P+   +L  EL +I Q+GF  YFL V   + +++  G+ +  GRGS 
Sbjct: 306  FLFPDEEERLKRRPEYDERLETELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGPGRGSG 365

Query: 334  ANSAVCYCLRVTPVDPAQMDLLFERFISAERGEPPDIDVDFEHERREEVIQHIYDTYGRH 393
            A S V Y L++T +DP + DLLFERF++ ER   PD DVDF  E+R++VI+H+ D YGR 
Sbjct: 366  AGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVADMYGRD 425

Query: 394  RAGLTATVIHYRTRSAIRDVGKVMGLSEDTVEALAK---ANSGWGRRGIKDEHVRELGLD 450
                  T      ++ IRDVG+V+G     V+ ++K    + G       +   +   + 
Sbjct: 426  AVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLIPPDPGMTLAKAFEAEPQLPEIY 485

Query: 451  PTEPGLARTLSLAEELTGFPRHLSQHVGGFVISKGRLDELVPIENAGMEDRTVIQWDKDD 510
              +  +   + +A +L G  R+  +H GG VI+  ++ +  P+         V Q+DK D
Sbjct: 486  EADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEEGKHPVTQFDKSD 545

Query: 511  LDALGLMKVDVLALGMLSCIRKAFDLLRLHHGRD----LCLATLPREDASTYDMLCKADA 566
            ++  GL+K D L L  L+ I  A +++     ++    L +A +P +D  ++DML +++ 
Sbjct: 546  VEYAGLVKFDFLGLRTLTIINWALEMINKRRAKNGEPPLDIAAIPLDDKKSFDMLQRSET 605

Query: 567  VGVFQVESRAQMSMLPRLRPRRFYDLVVEVAIVRPGPIQGGMVHPYLRRRQGKETVDYPS 626
              VFQ+ESR    ++ RL+P  F D++  VA+ RPGP+Q GMV  ++ R+ G+E + YP 
Sbjct: 606  TAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREEISYPD 665

Query: 627  -----EELRQVLGKTLGVPLFQEQAMKIAMVAAGFTASEADGLRRAMATFRHTGQVGAYG 681
                 E L+ VL  T G+ L+QEQ M+IA V +G+T   AD LRRAM   +   ++    
Sbjct: 666  VQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGK-KKPEEMAKQR 724

Query: 682  DKLIGGMVARGYERDFAERVFKQIEGFGEYGFPESHAAAFAHLVYVSAWLKCHYPAAFAC 741
                 G    G   + A ++F  +E F  YGF +SH+AA+A + Y + WLK HYPA F  
Sbjct: 725  SVFAEGAEKNGINAELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPAEFMA 784

Query: 742  ALLNSQPMGFYAPAQIVRDAADHGVEIRPVDVNHSDWDCTL-EGKALRLGLRQVSGLARR 800
            A++ +          +V +    G++I P D+N   +   + +   +  G+  + G+   
Sbjct: 785  AVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKGVGEG 844

Query: 801  DGERLAAARGAG--YASAYGLWR---TSGLERAALDRLAAADAFGSMGLGR----REAAW 851
              E +  AR  G  +   + L     T  L R  L++L  + AF  +G  R         
Sbjct: 845  PIEAIIEARNKGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMNSLGD 904

Query: 852  AIKALD----------APPLPLFEEAPPPPEAKVA-LPPASVGEEVVGDYAALKLSLKCH 900
            A+KA D          A    +  E P   E   A   P      + G+   L L L  H
Sbjct: 905  ALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLYLTGH 964

Query: 901  PL-AVLRDPFRVLGIMTNASLKDRKGGRVAVSGLVLVRQR---PGSANGVLFITLEDETG 956
            P+   L++  R +G +    +   + G+V  +  ++V  R       N +   TL+D +G
Sbjct: 965  PINQYLKEIERYVGGVRLKDMHPTERGKVITAAGLVVAARVMVTKRGNRIGICTLDDRSG 1024

Query: 957  IANIVVWPDMFETFRRPILGGHLLRVDGRVQSED--GVIHVVAEKIEDLSAHLGALARG 1013
               ++++ D  + +++ +    +L V G+V  +D  G + + A ++ D+       ARG
Sbjct: 1025 RLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKYARG 1083