Pairwise Alignments

Query, 1022 a.a., error-prone DNA polymerase from Magnetospirillum magneticum AMB-1

Subject, 1085 a.a., DNA polymerase III, alpha chain from Agrobacterium fabrum C58

 Score = 1090 bits (2819), Expect = 0.0
 Identities = 584/1030 (56%), Positives = 720/1030 (69%), Gaps = 24/1030 (2%)

Query: 4    YAELQTLSNYTFLEGASHADELAITASALGLEAIAICDRNTLSGIVRAHVAAKAAGIRLV 63
            YAELQ  ++++FL GAS A EL  TA ALG++AI + DRN+L+GIVRA  A++A  IRLV
Sbjct: 3    YAELQVTTHFSFLRGASSAQELFETAKALGIQAIGVVDRNSLAGIVRALEASRATDIRLV 62

Query: 64   VGARLDLTDGASLLCFPTDRAAYGRLSRLLTLGRRRAPKGECHLARADVAEHAEGQILVL 123
            VG RLDLTDG SLL +PTDRAAY RL+RL+TLG+ R  K  C L   DV  ++ G I VL
Sbjct: 63   VGCRLDLTDGMSLLVYPTDRAAYSRLTRLITLGKSRGGKNNCILHWDDVIAYSRGMIGVL 122

Query: 124  IAPDPLEEGFAAQLAEWRTVVGDRLYLAATRRFRGDDGERLRVL----AGFGIPLVATND 179
            + PD  +   AAQL       GDR Y++   R R +D  RL  +    A F +  V TND
Sbjct: 123  V-PDLPDATCAAQLRRIAEAFGDRAYVSLCLRRRQNDQMRLHEISNLAARFKVKTVVTND 181

Query: 180  VLYHTPARRPLADVLTCIRQGTTLAAAGWALSAHGERHLKSPAEMARLFAACPEALANGL 239
            VL+H P RR L D++TCIR  TT+   G+    H +R+LK P EM RLF+   EALA  L
Sbjct: 182  VLFHEPGRRQLQDIVTCIRHNTTIDDVGFERERHADRYLKPPEEMERLFSRYSEALARTL 241

Query: 240  EVVRRCRFSLDELAYEYPNE-VAAGMDPQERLEILTRQGAARRYPRGVPPKVQAQLAHEL 298
            E+VRRC+FSL+EL Y+YP E +  G D Q  LE    + A  RYP G+P  V   + HEL
Sbjct: 242  EIVRRCKFSLEELTYQYPEEAIVPGKDAQASLEHYVWECAPDRYPEGLPQDVLKTVRHEL 301

Query: 299  ALIRQLGFAPYFLTVHAIVAFAESRGILCQGRGSAANSAVCYCLRVTPVDPAQMDLLFER 358
             LIR + +APYFLTV +IV FA S+GILCQGRGSAANSAVCY L +T +DP+  DLLFER
Sbjct: 302  DLIRTMKYAPYFLTVFSIVRFARSQGILCQGRGSAANSAVCYILGITSIDPSTNDLLFER 361

Query: 359  FISAERGEPPDIDVDFEHERREEVIQHIYDTYGRHRAGLTATVIHYRTRSAIRDVGKVMG 418
            F+S ER EPPDIDVDFEHERREEVIQ IY TY + +A L ATV  YR + AIRDVGK +G
Sbjct: 362  FVSQERDEPPDIDVDFEHERREEVIQWIYKTYTKDKAALCATVTRYRAKGAIRDVGKALG 421

Query: 419  LSEDTVEALAKANSGWGRRGIKDEHVRELGLDPTEPGLARTLSLAEELTGFPRHLSQHVG 478
            L ED ++AL+     W    + D ++REL L+P +  LA TL LA++L G PRHL QH G
Sbjct: 422  LPEDVIKALSSGMWSWSEE-VPDRNIRELNLNPDDRRLALTLKLAQQLMGAPRHLGQHPG 480

Query: 479  GFVISKGRLDELVPIENAGMEDRTVIQWDKDDLDALGLMKVDVLALGMLSCIRKAFDLLR 538
            GFV++  RLD+LVPIE A M+DR +I+WDKDD++AL  MKVDVLALGML+C+ KAFDL+R
Sbjct: 481  GFVLTHDRLDDLVPIEPATMKDRQIIEWDKDDVEALKFMKVDVLALGMLTCMAKAFDLIR 540

Query: 539  LHHGRDLCLATLPREDASTYDMLCKADAVGVFQVESRAQMSMLPRLRPRRFYDLVVEVAI 598
             H G+ L L+ + +EDA+TY M+ KAD +G FQ+ESRAQM+MLPRL+PR FYDLVV+VAI
Sbjct: 541  EHKGQQLDLSNIEQEDAATYAMIRKADTLGTFQIESRAQMAMLPRLKPRTFYDLVVQVAI 600

Query: 599  VRPGPIQGGMVHPYLRRRQGKETVDYPSEELRQVLGKTLGVPLFQEQAMKIAMVAAGFTA 658
            VRPGPIQG MVHPYLRRR+GKE V+YP+ EL  VLGKTLGVPLFQE AM++AMV AGFT 
Sbjct: 601  VRPGPIQGDMVHPYLRRREGKEPVEYPTPELEAVLGKTLGVPLFQESAMRVAMVCAGFTG 660

Query: 659  SEADGLRRAMATFRHTGQVGAYGDKLIGGMVARGYERDFAERVFKQIEGFGEYGFPESHA 718
             EAD LR++MATF+ TG V  + DKL+ GMV  GY  +FAE+ F Q+EGFG YGFPESHA
Sbjct: 661  GEADQLRKSMATFKFTGGVSRFKDKLVSGMVKNGYSPEFAEKTFSQLEGFGSYGFPESHA 720

Query: 719  AAFAHLVYVSAWLKCHYPAAFACALLNSQPMGFYAPAQIVRDAADHGVEIRPVDVNHSDW 778
            A+FA + Y S ++KCHYP  F  ALLNSQPMGFYAPAQIV DA  HGVE+RPV VN S W
Sbjct: 721  ASFALIAYASNYIKCHYPDVFCAALLNSQPMGFYAPAQIVGDAIKHGVEVRPVCVNRSRW 780

Query: 779  DCTLE------GKALRLGLRQVSGLARRDGERLAAAR-GAGYASAYGLWRTSGLERAALD 831
            DCTLE        A+RLG RQV GLA  D  R+ AAR    +AS   +WR S +   AL 
Sbjct: 781  DCTLERIEGSDRHAVRLGFRQVKGLAVADAARIVAARMNNPFASVDDMWRRSSVPTEALV 840

Query: 832  RLAAADAF-GSMGLGRREAAWAIKALDAPPLPLFEEA--------PPPPEAKVALPPASV 882
            +LA ADAF  S+ L RR+A WAIKAL   PLPLF  A            E +VAL   + 
Sbjct: 841  QLAEADAFLPSLKLERRDALWAIKALRDEPLPLFAAAAEREATAIAEQQEPEVALRQMTD 900

Query: 883  GEEVVGDYAALKLSLKCHPLAVLRDPFRVLGIMTNASLKDRKGGR-VAVSGLVLVRQRPG 941
            G  V+ DY+   L+L+ HP+A LR       I+  A   + + GR V  +GLVLVRQ+PG
Sbjct: 901  GHNVIEDYSHTGLTLRQHPVAFLRRDLSARNIIPCAEAMNARDGRWVYTAGLVLVRQKPG 960

Query: 942  SANGVLFITLEDETGIANIVVWPDMFETFRRPILGGHLLRVDGRVQSEDGVIHVVAEKIE 1001
            SA GV+FIT+EDETG ANIVVWP +FE  R  +LG  ++ ++GR+Q E  V+H+VA+++ 
Sbjct: 961  SAKGVMFITIEDETGPANIVVWPSLFEKRRSVVLGSSMMAINGRIQREGEVVHLVAQQLF 1020

Query: 1002 DLSAHLGALA 1011
            DLSA L  LA
Sbjct: 1021 DLSADLVGLA 1030