Pairwise Alignments

Query, 728 a.a., tetratricopeptide repeat protein from Magnetospirillum magneticum AMB-1

Subject, 628 a.a., Lipopolysaccharide assembly protein B from Azospirillum sp. SherDot2

 Score =  145 bits (365), Expect = 8e-39
 Identities = 164/634 (25%), Positives = 252/634 (39%), Gaps = 48/634 (7%)

Query: 78  ALGSAQAASGKTGPAEKSFKRVLALAPDLSDAAENLARLLIESQRAAEALAPLRSVLSRE 137
           A   A+   G+   AE  ++ VL   P    A  NLA LL  ++R  EA   LR+ ++  
Sbjct: 8   AAALAEHEDGRFAAAEAGYRAVLVREPSHPQANNNLAVLLRRARRWGEAAVCLRTAVAGW 67

Query: 138 PGRLASRHLLGRALRDTGELEGAMAEFQAVLKAQPDFAPALNDLGLLYFAGGKGEDALAC 197
           P     R  L   L D G +  AMA  +  L   P+   +  + G L  +      A   
Sbjct: 68  PEDPGVRSNLACTLGDQGRVAEAMAAMRVALALSPEAPGSWFNAGNLLRSVQNPRGATIA 127

Query: 198 FEHLLALNPADHVAANNRALTLRVLNRPEEAEQQYRAILARHPQAPEVNLNLGKLLARMG 257
           +   + L+P    A +N     R      +A   Y A +   P  P+  +NLG+ L   G
Sbjct: 128 YGRAIRLDPGMGEALSNLGDCQREDGALMQAVDSYLAAIRARPDLPQPFVNLGEALKEQG 187

Query: 258 RVMDSVPYLEKGGCIEARWWDALVLPNQYETEDEIIGWRKRFADKLGAVTAEILALPPGE 317
           R+ +++  L+KG                 E   ++   R         +T       P E
Sbjct: 188 RIAEAIGILQKG----------------LEHHPDMAPMRSNLL-----LTLHYSPWIPPE 226

Query: 318 VAAQAGILEMDVFFLAYQAENDRELNTLLRSAQTRVAQACFGHGAPLPARPAGGRIRVGF 377
           V A+A           +   N+R    L   A+       F +G     R    R+RVG+
Sbjct: 227 VIARA-----------HAHWNERHARPLFDGAKDFAND--FANG-----RDPDRRLRVGY 268

Query: 378 FSADYFTHVVNRLTAAWATGLDRDEFEVFVFHAGAKWDGETERLAGLVEHFVD-AYAPNA 436
            S D+  H             DR   EV  +    + D  T R+  L   +   A   +A
Sbjct: 269 VSPDFCHHACAHFIEPLLREHDRGAVEVLCYATARRRDDMTLRMEALAAGWRSLADLDDA 328

Query: 437 ERARMVREADLDILVYPDVGLHPE--IDVLAMLRLAPIQCAAFAHPVTTGMASMDYFISG 494
           + A ++    +DILV  D+  H      +L   R AP+Q     +P TTGM ++DY ++ 
Sbjct: 329 DAAALIGLDRIDILV--DLAGHTAGGRPLLFARRPAPVQVTWLGYPDTTGMPAVDYRLTD 386

Query: 495 ELIEPEG-AEAHYSEKLVRLPGIGFNIIPPKVEEAVLPPARPAGAGPLFFCAQSLFKMLP 553
            + +P G ++  ++E+LVRLP       PP        P   A     F    +L K+ P
Sbjct: 387 AVADPPGGSDGRHAERLVRLPHGFLAFQPPDSAGPAGNPPALANGFVTFGSLNNLAKVSP 446

Query: 554 RQDNVFPRIAKAVGPCTIDFIDRHGSFTELFRRRMDKAFAAHGLDAGQYIRIHSQVTSV- 612
               V+  +   V P     +   G      R  + K FA  G+   + I + + V SV 
Sbjct: 447 EVVRVWAALLARV-PSARLLLKSPGFEDIAVRSAVLKDFARRGVRP-ERIELLAPVPSVA 504

Query: 613 EFLGMLKAADVSLDSLDWSGGYTTLEALACGTPIAARTGNYLRGHVSAGILRAAGLDELV 672
           E L +    DV+LD   ++G  TT EAL  G P+    G++    V A +L   GL+EL+
Sbjct: 505 EHLRVYDRLDVALDPFPYNGTTTTCEALWMGVPVITLAGSHHVARVGASLLSHCGLEELI 564

Query: 673 AKDEDAYVAVAARLGTDKAYREQVSATMRANAPG 706
            +DE  YV  A+ L  D +    +   MR    G
Sbjct: 565 QQDEAGYVDAASSLAGDLSRLSGLRRGMRKRLEG 598



 Score = 55.5 bits (132), Expect = 8e-12
 Identities = 49/211 (23%), Positives = 84/211 (39%)

Query: 9   FRQGIGALQQGKWDEAARQFRTLTGRTPNAPEPFYYLGVALLSGGKPDEAAETLTRLIRK 68
           F   +   + G++  A   +R +  R P+ P+    L V L    +  EAA  L   +  
Sbjct: 7   FAAALAEHEDGRFAAAEAGYRAVLVREPSHPQANNNLAVLLRRARRWGEAAVCLRTAVAG 66

Query: 69  HGDNPMALNALGSAQAASGKTGPAEKSFKRVLALAPDLSDAAENLARLLIESQRAAEALA 128
             ++P   + L       G+   A  + +  LAL+P+   +  N   LL   Q    A  
Sbjct: 67  WPEDPGVRSNLACTLGDQGRVAEAMAAMRVALALSPEAPGSWFNAGNLLRSVQNPRGATI 126

Query: 129 PLRSVLSREPGRLASRHLLGRALRDTGELEGAMAEFQAVLKAQPDFAPALNDLGLLYFAG 188
                +  +PG   +   LG   R+ G L  A+  + A ++A+PD      +LG      
Sbjct: 127 AYGRAIRLDPGMGEALSNLGDCQREDGALMQAVDSYLAAIRARPDLPQPFVNLGEALKEQ 186

Query: 189 GKGEDALACFEHLLALNPADHVAANNRALTL 219
           G+  +A+   +  L  +P      +N  LTL
Sbjct: 187 GRIAEAIGILQKGLEHHPDMAPMRSNLLLTL 217