Pairwise Alignments

Query, 668 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

Subject, 1211 a.a., two-component sensor protein from Pseudomonas putida KT2440

 Score =  107 bits (266), Expect = 4e-27
 Identities = 106/391 (27%), Positives = 178/391 (45%), Gaps = 28/391 (7%)

Query: 281 AVLFLLTVLASFGWAFHVRRQQRAVRLVAESEERYRALMETAPMAVVVH-RDGVILFANT 339
           AVL LL +L +      +R++QRA R + +     RAL+   P  + V  R+G +   N 
Sbjct: 544 AVLLLLALLWNARLRLQIRQRQRAERALNDQLAFMRALLNGTPHPMYVRDREGCLKSCNY 603

Query: 340 QATRTVRAPAGETLIGRKVLDFVFPDDRA--DVAARMGAAMADPETVVGG-PVRYVARDG 396
                V+A + + +IG+K+ D +F D      + A     MA    ++   P+R   RD 
Sbjct: 604 SYLEAVQARSDQ-VIGKKLKDSLFADSEQARQIQADYQKVMAAGSPLIKDRPLRIKGRDL 662

Query: 397 RVVECEVITTRVTLDGEPAVLSVVLDVSQRNQAERERERLLESLQRSNEDLQQFAYIASH 456
            +    ++  R +L     ++   +D+S+R Q   E  +  +    +N     F    SH
Sbjct: 663 TIYHW-ILPYRDSLGEVQGIIGGWIDISERRQLVLELRQAKQQADDANRAKSTFLATISH 721

Query: 457 DLQEPLRNVAGYVQLLGRRY-RGRLDKDADDFIAFAVQGTKRMQEMIANLLDYSLLHRED 515
           +++ P+  V G ++L  +R  +GR+D+ A   +  A    K +  +I ++LD  ++  E 
Sbjct: 722 EIRTPMNAVIGMLELAVKRADQGRVDRSA---LELAHHSAKDLLGLIGDILD--IVRIES 776

Query: 516 GE----PACVDSRGPLDEALADLGAAMDESGAVVEVVGVMPV----VLARRVELARIFLN 567
           G     P  VD    ++           + G  +EV  + P     VL   +   ++  N
Sbjct: 777 GHLSLAPEVVDLAALVESVARIFDGQARQKGLALEVQ-IAPAARCHVLLDPLRFKQVLSN 835

Query: 568 LIGNAIKYRRADTVPRIRIFARRDGLTWV----FSVADNGIGMEPAYLDRIFTLFQRL-- 621
           L+ NAIK+     V RI +    DG +        V D+GIG+ P  L R+F  F +   
Sbjct: 836 LVSNAIKFTEHGQV-RISVRLLDDGTSTPAVLELEVRDSGIGIHPDDLQRLFNPFIQANP 894

Query: 622 HSRETYDGTGIGLAICRKLVQHNGGRIWAES 652
           HS+    GTG+GLAICR L +  GG +  +S
Sbjct: 895 HSQGARAGTGLGLAICRNLCEMMGGSLSMKS 925