Pairwise Alignments

Query, 171 a.a., RNA polymerase sigma factor from Magnetospirillum magneticum AMB-1

Subject, 182 a.a., RNA polymerase sigma-70 factor, ECF subfamily from Pseudomonas putida KT2440

 Score = 42.7 bits (99), Expect = 3e-09
 Identities = 48/174 (27%), Positives = 75/174 (43%), Gaps = 26/174 (14%)

Query: 7   SSGDR--LAATLDRDRGKLLGFVRGRMGGGLQDQDPEDILSDVVLGLLERA--------D 56
           + GDR  L A  D +  +LLG  R        D   EDI+ D ++ +  RA         
Sbjct: 18  AQGDRRALQALYDHEGARLLGVARRI---ARDDATAEDIVHDAIIRIWTRAASYDPARGS 74

Query: 57  LLAEVENLTAYLLTAMVNRVRDLFRRRRDLPMPEAMPAEPSQPAGVEERLELT------- 109
               + ++T +L    +N +RD    RR+  + +A     S   G  + L+L        
Sbjct: 75  ARGWIYSITRHLA---LNSIRDT---RRETVLTDADTETASTLHGRVDDLDLWSGSAKIY 128

Query: 110 RALSLLSTAEQAVWLAVEMEGFAFVELAEAWGEPLGTLLSRKSRATRRLRKALE 163
           R L  L  A Q   L   ++G +  E+A   G PLGT+ +   R+ + LR+ LE
Sbjct: 129 RCLEQLQPAPQRCILHAYVDGCSHAEIAGLLGAPLGTVKAWIKRSLKALRECLE 182