Pairwise Alignments

Query, 171 a.a., RNA polymerase sigma factor from Magnetospirillum magneticum AMB-1

Subject, 173 a.a., putative ECF sigma factor PrtI from Pseudomonas putida KT2440

 Score = 50.4 bits (119), Expect = 2e-11
 Identities = 39/141 (27%), Positives = 65/141 (46%), Gaps = 22/141 (15%)

Query: 41  EDILSDVVLGLLERADLLAEVENLTAYLLTAMVNRVRDLFRRRR---------------D 85
           +D++   V   L R D   + + L A+L T +  +  D  RR R               D
Sbjct: 31  DDLVQATVERALSRRDQQRDADALRAWLFTILYRQFLDGKRRERLHARWLSWFGRNEHDD 90

Query: 86  LPMPEAMPAEPSQPAGVEERLELTRALSLLSTAEQAVWLAVEMEGFAFVELAEAWGEPLG 145
            P+ + +       A ++       A + L+  ++A+ L V +EG ++ E A+A G P+G
Sbjct: 91  EPVGDNLETIVLAQADLQ-------AFARLTAEQRALLLLVSIEGLSYKEAAQALGIPIG 143

Query: 146 TLLSRKSRATRRLRKALEETP 166
           T++SR SRA   LR+  E  P
Sbjct: 144 TVMSRLSRARNALRELTEGNP 164