Pairwise Alignments

Query, 171 a.a., RNA polymerase sigma factor from Magnetospirillum magneticum AMB-1

Subject, 178 a.a., ECF family sigma factor from Agrobacterium fabrum C58

 Score = 56.6 bits (135), Expect = 2e-13
 Identities = 46/132 (34%), Positives = 61/132 (46%), Gaps = 5/132 (3%)

Query: 37  DQDPEDILSDVVLGLLERADLLAEVENLTAYLLTAMVNRVRDLFRRRRDLPMPEAMPAE- 95
           D D ED+L D V   L           L  +  T M N  R+  R  +  P       E 
Sbjct: 38  DADGEDLLQDCVEKALANKRQWRGT-GLKTWAYTIMTNLYRNRHRAEKRHPSESLDGHET 96

Query: 96  ---PSQPAGVEERLELTRALSLLSTAEQAVWLAVEMEGFAFVELAEAWGEPLGTLLSRKS 152
              P   +   E   L RAL+LLS   +AV + V +EG+++ E AE    PLGT++SR S
Sbjct: 97  IAIPDTLSDTLENDRLHRALALLSPDMRAVLMLVTVEGYSYQEAAETLAIPLGTVMSRLS 156

Query: 153 RATRRLRKALEE 164
           RA   LR+ L E
Sbjct: 157 RARETLRQHLAE 168