Pairwise Alignments

Query, 764 a.a., ATP-dependent Clp protease ATP-binding subunit ClpA from Magnetospirillum magneticum AMB-1

Subject, 854 a.a., Chaperone protein ClpB from Pseudomonas putida KT2440

 Score =  315 bits (807), Expect = 6e-90
 Identities = 195/481 (40%), Positives = 280/481 (58%), Gaps = 31/481 (6%)

Query: 2   LSRNLEQSLHRALSHATERRHEYATLEHLLLALTDDQDAVA--VLRACNVDVDKLKRDLG 59
           L+  L+ ++  A S A    H      HLL AL + Q      +L     D++ L++ L 
Sbjct: 6   LTSKLQLAISDAQSLAVGMDHPAIEPVHLLQALLEQQGGSIKPLLMQVGFDINGLRQGLV 65

Query: 60  EFIDTNLSELVSPRGTDPKPTAGFQRVVQRAAIHVQSSGREEVTGANVIVALFSERESHA 119
           + +D  L ++ +P G D   +    R++ +A    Q  G + ++   V++A   E     
Sbjct: 66  KELD-QLPKIQNPTG-DVNMSQDLARLLNQADRLAQQKGDQFISSELVLLAAMDENSKLG 123

Query: 120 VYFLQSQDMTRLDAVNYISHGVAKAPGRGQNRTVHGADDEANPDKVVKKGQEALNAYCIN 179
              L              S GV+K         + G    A  D   ++ ++AL+ Y ++
Sbjct: 124 KLLL--------------SQGVSKKALENAINNLRGG--AAVNDANAEESRQALDKYTVD 167

Query: 180 LNKKAAQGKIDPLIGRDEEIDRTIQILCRRSKNNPLYVGDPGVGKTAIAEGLARRIVNGE 239
           L K+A +GK+DP+IGRD+EI RT+Q+L RR+KNNP+ +G+PGVGKTAIAEGLA+RI+NGE
Sbjct: 168 LTKRAEEGKLDPVIGRDDEIRRTVQVLQRRTKNNPVLIGEPGVGKTAIAEGLAQRIINGE 227

Query: 240 VPDVLKNATIFALDMGSLLAGTRYRGDFEERLKAVVTELENYDG-AVMFIDEIHTVIGAG 298
           VPD LK   + ALDMG+L+AG +YRG+FEERLK+++ EL   +G  ++FIDE+HT++GAG
Sbjct: 228 VPDGLKGKRLLALDMGALIAGAKYRGEFEERLKSLLNELSKQEGQIILFIDELHTMVGAG 287

Query: 299 ATSGGSMDASNLLKPALASGSLRCIGSTTYKEFRNHFEKDRALVRRFQKIDVNEPSIPDT 358
               G+MDA N+LKPALA G L C+G+TT  E+R   EKD AL RRFQK+ V EPS  DT
Sbjct: 288 -KGEGAMDAGNMLKPALARGELHCVGATTLNEYRQFIEKDAALERRFQKVLVEEPSEEDT 346

Query: 359 IKILNGIKTYYESHHKVRYTAEAIKAAVELSAKYITDRKLPDKAIDVIDEVGASRMLLPE 418
           I IL G+K  YE HHKV  T  AI AA +LS +YITDR+LPDKAID+IDE  +   +  +
Sbjct: 347 IAILRGLKERYEVHHKVAITDGAIIAAAKLSHRYITDRQLPDKAIDLIDEAASRIRMEID 406

Query: 419 SK-------RRKTVTVRDVEEIVAKIARIPPKSVSTNDVEALRNLERDLKTL--VFGQDK 469
           SK        R+ + ++   + + K      K       E +  LER+   L  ++  +K
Sbjct: 407 SKPEVLDRLDRRLIQLKVESQALKKEEDEAAKKRLEKLTEEIERLEREYSDLEEIWASEK 466

Query: 470 A 470
           A
Sbjct: 467 A 467



 Score =  278 bits (712), Expect = 7e-79
 Identities = 158/420 (37%), Positives = 252/420 (60%), Gaps = 15/420 (3%)

Query: 336 EKDRALVRRFQK----IDVNEPSIPDTIKILNGIKTYYESHHKVRYTAEAIKAAVELSAK 391
           E+D A  +R +K    I+  E    D  +I    K   +   +++   E  +  +E + +
Sbjct: 432 EEDEAAKKRLEKLTEEIERLEREYSDLEEIWASEKAEVQGSAQIQQKIEQSRQELEAARR 491

Query: 392 YITDRKLPDKAIDVIDEVGASRMLLPESKR------RKTVTVRDVEEIVAKIARIPPKSV 445
                ++ +    VI ++  S  ++ +  +      R  VT  ++ E+V+K   IP   +
Sbjct: 492 KGDLNRMAELQYGVIPDLERSLQMVDQHGKTDNQLLRNKVTEEEIAEVVSKWTGIPVAKM 551

Query: 446 STNDVEALRNLERDLKTLVFGQDKAIEALASAIKLARAGLREPEKPIGCYLFSGPTGVGK 505
              + E L  +E  L   V GQ +A+ A+A+A++ +RAGL +P +P G +LF GPTGVGK
Sbjct: 552 LEGEREKLLKMEELLHQRVIGQSEAVTAVANAVRRSRAGLSDPNRPSGSFLFLGPTGVGK 611

Query: 506 TEVARQLAKIM---GIELTRFDMSEYMERHSVSRLIGAPPGYVGFDQGGLLTDAIDQHPH 562
           TE+ + LA+ +      + R DMSE+ME+HSV+RLIGAPPGYVG+++GG LT+A+ + P+
Sbjct: 612 TELCKALAEFLFDTEEAMVRIDMSEFMEKHSVARLIGAPPGYVGYEEGGYLTEAVRRKPY 671

Query: 563 SVLLLDEIEKAHPDLFNILLQVMDHGRLTDHNGKTVDFRNVILIMTTNAGAADLAKSAIG 622
           SV+LLDE+EKAHPD+FN+LLQV++ GRLTD +G+TVDFRN +++MT+N G+A + +  +G
Sbjct: 672 SVVLLDEVEKAHPDVFNVLLQVLEDGRLTDSHGRTVDFRNTVIVMTSNLGSAQI-QELVG 730

Query: 623 FGRETREGDDTDAINRMFSPEFRNRLDSTIAFANLTPEIVAQVVDKFVMQLETQLGDRDV 682
             RE +     DA+   F PEF NR+D  + F  L  E +A + +  + +L ++L +R++
Sbjct: 731 -DREAQRAAVMDAVGAHFRPEFINRIDEVVVFEPLGREQIAGITEIQLGRLRSRLLEREL 789

Query: 683 TIELTDEARAWLAKKGYDRSFGARPLARVIQEHIKKALAEELLFGRLSKGGIVRVRVGED 742
           ++ L+ EA   L   GYD  +GARPL R IQ  I+  LA+ +L G+   G  +  +V  D
Sbjct: 790 SLSLSPEALDKLIAVGYDPVYGARPLKRAIQRWIENPLAQLILAGKFLPGTAITAKVEGD 849