Pairwise Alignments

Query, 742 a.a., ribonuclease R from Magnetospirillum magneticum AMB-1

Subject, 875 a.a., exoribonuclease R from Pseudomonas simiae WCS417

 Score =  405 bits (1041), Expect = e-117
 Identities = 270/762 (35%), Positives = 391/762 (51%), Gaps = 49/762 (6%)

Query: 8   PIPSKQEILDFIRSQPGRVGKRELARAFNLRGSDKID-LKAILKELEREGVVERGQKRRF 66
           PIPS++ IL  +  +     + +L   F L   D+++ L+  L+ +ER+  +   ++  +
Sbjct: 21  PIPSRELILAHLADRGSPASREQLVEEFGLTTEDQLEALRRRLRAMERDAQLIYTRRGTY 80

Query: 67  ASPGTLPDVGVVEIIG-TDSDGELLARPLNYEGEGRPPRIFMAPFRAGEAAVGVGDRVLA 125
           A    L D+ +  I G  D  G L+        +     +FM+P  A    V  GDR LA
Sbjct: 81  APVDKL-DLILGRIAGHRDGFGFLIP-------DDGSDDLFMSP--AQMRLVFDGDRALA 130

Query: 126 KLKRVRGEDVYEARAIRIIGEARARVLG-VFEPNPDGSGRLRPTSRKEKAEYMVPRGETG 184
           ++  +      E   + ++  A   ++G  FE    G G + P + K + E ++  G  G
Sbjct: 131 RVSGLDRRGRREGVIVEVVSRAHESIVGRYFEEG--GIGFVVPDNPKVQQEVLITPGRNG 188

Query: 185 DAKAGELVLADIMPGRLYGMRT-ASVKERMGLLGAPRSVSLVAIHTNDVPFEFPEAALQQ 243
            AK G+ V   I        +    + E +G   AP     VA+ T D+P  +PEA L++
Sbjct: 189 AAKVGQFVEVKITHWPTARFQPQGDIVEVVGNYMAPGMEIDVALRTYDIPHVWPEAVLKE 248

Query: 244 AAAEGPA----PMNERTDLRSIPLVTIDGEDARDFDDAVFAEPDPDPKN--PGGWHCMVA 297
           A    P        +R DLR +P VTIDGEDARDFDDAV+ E  P       GGW   VA
Sbjct: 249 AGKLKPEVEEKDKEKRIDLRHLPFVTIDGEDARDFDDAVYCEAKPGKLRLFSGGWKLFVA 308

Query: 298 IADVSWYVRPGDSLDKEAFKRGNSVYFPDRVVPMLPEELSNGWCSLKPDEDRPCMAVHFW 357
           IADVS YV+ G +LD EA  RGNSVYFP+RV+PMLPE+LSNG CSL P  DR  M     
Sbjct: 309 IADVSSYVKIGSALDNEAQVRGNSVYFPERVIPMLPEQLSNGLCSLNPKVDRLAMVCEMT 368

Query: 358 LDALGNKLHHRFVRGMMRSVARLTYTQVQAAKDGTPDDRTGPL------LAPVIEPLYGA 411
           +   G    ++F   ++ S ARLTY +V    +         L      + P ++ LY  
Sbjct: 369 ISKTGEMTDYQFYEAVIHSQARLTYNKVSTILETPKTSEAKALRSEYAGVVPHLKQLYSL 428

Query: 412 WAALFRERKERGVLELDIPERKVTITPEGKVEAITERERFDSHRLIEDFMIMANVCAAET 471
           +  L   R  RG ++ +  E ++    E K+ AIT   R D+H+LIE+ M+ ANV  AE 
Sbjct: 429 YKVLLGARHTRGAIDFETQETRIVFGSERKIAAITPTTRNDAHKLIEECMLAANVATAEF 488

Query: 472 LEKVHKPCMYRIHDLPSQEKLDGLREFLSSMDLKLAKGQ-VLRPAHFNRILEAVEGTANS 530
           L+K   P +YR+HD P  E+L+ LR FL  + L L KG+    P  +  +L +++   + 
Sbjct: 489 LKKHEIPALYRVHDGPPPERLEKLRAFLGELGLSLHKGKDGPTPKDYQALLASIKDRPDY 548

Query: 531 HLVSEVILRSQAQAQYSPENIGHFGLGLARYAHFTSPIRRYADLLVHRALISGLH----- 585
           H++  V+LRS +QA YS +N GHFGL    Y HFTSPIRRY DLL HRA+ S +H     
Sbjct: 549 HVIQTVMLRSLSQAVYSADNQGHFGLNYEAYTHFTSPIRRYPDLLTHRAIRSVIHSKQNT 608

Query: 586 -----LGEGGLPADAV-----AEFAEWGEHISVTERRAATAEREAVDRYVTAFLADKVGA 635
                 G   +P   +     A   + GE  S++ERRA  A R+ V+     F+ D+VG 
Sbjct: 609 PHVKRAGAMTIPKARIYPYDEAALEQLGEQCSMSERRADEATRDVVNWLKCEFMKDRVGE 668

Query: 636 TFAGKVSGVTRFGLFVTLDQTGADGLVPISTLPEDFYVHDEVHHCLVGKRTRKTFQLGQK 695
           TF G ++ VT FGLFV L     +GLV ++ LP D+Y  D VHH L G+RT ++F+LG  
Sbjct: 669 TFPGVITAVTGFGLFVELTDIYVEGLVHVTALPGDYYHFDPVHHRLAGERTGRSFRLGDT 728

Query: 696 LDVELAEANTLTGSMVFRLG-----GAGERGLRPPRPPQSGR 732
           ++V++   +     + F +        G R  R   P   G+
Sbjct: 729 VEVQVMRVDLDERKIDFGMSDKPAESPGSRKKRGSEPASKGK 770