Pairwise Alignments

Query, 445 a.a., site-specific integrase from Magnetospirillum magneticum AMB-1

Subject, 394 a.a., integrase from Pseudomonas simiae WCS417

 Score =  129 bits (323), Expect = 2e-34
 Identities = 107/393 (27%), Positives = 165/393 (41%), Gaps = 14/393 (3%)

Query: 40  ALTDSVVKTLKPERGATTWREISDSGCRGLRLRVSPSGEKVWAVKVTVGAQRVRHTIGAY 99
           ALTD+  K  KP     T   I DS   GL L V+PSG K W  + T   ++VR +IG Y
Sbjct: 2   ALTDTAAKQAKPRENGYT---IPDS--LGLSLYVAPSGVKSWHFRFTWLGKQVRISIGTY 56

Query: 100 PAVSLGEARKRAEAYLATARDGASPDELDARQRAETM-----TVTMAHSEYIEAMRSSLR 154
           P   L EAR R +       +G  P +    ++A  +     T    + E++   + S+ 
Sbjct: 57  PETGLKEARARRDEAREDIANGVDPRDSRREKKAGMIAAGGQTFRRVYDEWLAFRKGSIS 116

Query: 155 ASTISLKKTMFKTHVEGALGKRLIRTVRRSDVVDVVGGVSAKGFPVQANRVFSEVMALLR 214
             T  +        V   LG R I  ++R+DV+ ++  V  +G    A +V   +  +  
Sbjct: 117 PGTYRVISNAMALDVLPTLGDRQIDAIKRADVIALIRRVEKRGSVATAVKVRQRMSQVFS 176

Query: 215 WCEQKGYVDGVPSARKKDVRAATGGAKELARRRVLSEGEIIAVWNLTANMGDLTGDFLRL 274
           +    G ++  P+A    V    G  K            I+A     A+ G      L L
Sbjct: 177 YAIATGVIEANPTAEMHAVTEKMGQHKPHPFLPFSEMPRIMAAIRDCAS-GQQLKAALML 235

Query: 275 LLLTGQRRDEVRLMVWGEVDMDASLWTIPASRYKTGYSHTVPLPKQAMDILRSRW-VEGA 333
           ++ T  R  EVR   W E+D+DA++WT PA++ K    H VPL  QA+ IL S   + G 
Sbjct: 236 MIYTASRPGEVRHAEWSEIDLDAAIWTTPAAKMKMRRDHAVPLSTQAIAILESMLPITGD 295

Query: 334 TGYVLAGRGENKPFNGAASAVRRLRKELGGKADFTLHDIRRTLRTGLARMGIDETTAEMV 393
             YV   R       G   A   +    G     + H  R    T +   G +    E  
Sbjct: 296 KRYVFINRNSTTAPIGTNYA-NNVMDSCGLTGIQSPHGFRHLFSTEMNGRGYNRDWIERQ 354

Query: 394 IGHIPQGIVK-VYDQHDRMEERRTALKRWAEYV 425
           + H     ++ VY+    +++RR  ++ WA+ V
Sbjct: 355 LAHADSSFIRDVYNHATYLDQRRGMMQEWADLV 387