Pairwise Alignments

Query, 445 a.a., site-specific integrase from Magnetospirillum magneticum AMB-1

Subject, 411 a.a., integrase from Pseudomonas simiae WCS417

 Score =  108 bits (269), Expect = 4e-28
 Identities = 112/423 (26%), Positives = 174/423 (41%), Gaps = 67/423 (15%)

Query: 39  KALTDSVVKTLKPERGATTWREISDSGCRGLRLRVSPSGEKVWAVKVTVGAQRVRHT-IG 97
           + L D+ +  L+PE    T+RE   +G   L  RV P+G+K W ++      +     +G
Sbjct: 9   RPLADTTLAGLEPEHA--TYREQDGNG---LYFRVKPNGQKSWELRYKKPDGKWSWLGLG 63

Query: 98  AYPAVSLGEARKRAEAYLATARDGASP-----DELDARQRAETMTVTMAHSEYIEAMRSS 152
            YP +S   AR++A      A  G +P         A Q A   T      E+ EA R+S
Sbjct: 64  GYPEISGSLARQKAAQLREDASTGKNPLVSKQARKVADQVAANNTFEALGREWFEARRTS 123

Query: 153 LRASTISLKKTMFKTHVEGALGKRLIRTVRRSDVVDVVGGVSAKGFPVQANRVFSEVMAL 212
             + T                        RR     V+G +    FPV   RV++E++ L
Sbjct: 124 WESGTS-----------------------RR-----VLGALELHVFPVFGKRVYTEILPL 155

Query: 213 -----LRWCEQKGYVDGVPSARK-----KDVRAATG--------GAKELARRRVLSEGEI 254
                LR  EQKG ++ +   R       D+   TG        G  +  + R       
Sbjct: 156 EWMEFLRGMEQKGIIEQMGRVRAFCKEIYDLARVTGRAVHNPLEGLSKFLQSRSAENYAH 215

Query: 255 IAVWNLTANMGDLTG--------DFLRLLLLTGQRRDEVRLMVWGEVDMDASLWTIPASR 306
           +++  L A +  +            LRLL L   R  E+R   W E+D+   LWTIPA R
Sbjct: 216 VSIEELPALLRAINSYPHAKDVRIGLRLLSLLASRPSEIREARWSEIDLTKKLWTIPAER 275

Query: 307 YKTGYSHTVPLPKQAMDILRS-RWVEGATGYVLAGRGENKPFNGAASAVRRLRKELGGKA 365
            K    H VPL +Q+++ L   R + GA   +  GR +          +  LR+ LG   
Sbjct: 276 MKRRREHVVPLSRQSIEALTELRTLTGAYPLLFPGRKDRTIPRSNTVFLMALRR-LGYAG 334

Query: 366 DFTLHDIRRTLRTGLARMGIDETTAEMVIGHIPQGIVKVYDQHDRMEERRTALKRWAEYV 425
             T H  R    T L   G DE   E  + H  +GI  VY++   + +RR  ++ +A+++
Sbjct: 335 RQTGHGFRHIASTILNEQGFDENHIEAQLSHAKEGIAGVYNKAVYLPQRRVMMQWYADHL 394

Query: 426 ERV 428
           + +
Sbjct: 395 DEL 397