Pairwise Alignments

Query, 445 a.a., site-specific integrase from Magnetospirillum magneticum AMB-1

Subject, 432 a.a., hypothetical protein from Sphingobium sp. HT1-2

 Score =  111 bits (278), Expect = 4e-29
 Identities = 113/441 (25%), Positives = 175/441 (39%), Gaps = 45/441 (10%)

Query: 37  LAKALTDSVVKTLKPERGATTWREISDSGCRGLRLRVSPSGEKVWAVKVTVGAQRVRHTI 96
           +AK LT   V+ LK +  A     +    C GL LR+   G KVWA+++ +G +R    +
Sbjct: 4   VAKVLTAPAVERLKADGKANRRVMVGGDRCEGLHLRLE-GGAKVWALRLKIGERRRDIGL 62

Query: 97  GAY--------------PAVSLGEARKRAEAYLATARDGASPDELDARQRAETMTVTMAH 142
           G Y                +SL EAR +A    A  R G  P E    Q+      T   
Sbjct: 63  GRYNGKIGLTLEQSVREEGLSLAEARDKAREIRAKVRSGVDPIEEKRVQKQAAHIGTAKS 122

Query: 143 SEYIEAMRSSLRASTISLKK--------TMFKTHVEGALGKRLIRTVRRSDVVDVVGGVS 194
             + E     +   +   K            +T+    LGK  + +V R  ++DV+  + 
Sbjct: 123 KTFKECAELCISDKSGEWKNGKHVKQWSATLETYAYPKLGKLPVSSVDRGLILDVLRPIW 182

Query: 195 A-KGFPVQANRVFSEVMALLRWCEQKGYVDGV-PSARKKDVRAATGGAKELARRRVLSEG 252
           A KG    A+R+   +  +L W +  GY DG  P+A K ++  +    ++L R    S  
Sbjct: 183 ATKG--ETASRLRGRIETVLNWAKVNGYRDGENPAAWKGNLEHSLSKRQKLTRGHHAS-- 238

Query: 253 EIIAVWNLTANMGDL------TGDFLRLLLLTGQRRDEVRLMVWGEVDMDASLWTIPASR 306
             +    L + M DL      +   L   +LT  R  EVR   W E+D+D  +W IPA R
Sbjct: 239 --LPYAELGSFMADLRKRDGISARALEFAILTVARSGEVRKATWAEIDLDRKMWVIPAER 296

Query: 307 YKTGYSHTVPLPKQAMDILRSRWVEGATGYVL-AGRGENKPFNGAASAVRRLRKELGGKA 365
            K G  H VPL    + +L++      + YV  A RG         + ++R+      +A
Sbjct: 297 MKAGKEHRVPLSDAVVALLKALPRVAGSDYVFPAPRGGAMSDMALTAVLKRM-----DRA 351

Query: 366 DFTLHDIRRTLRTGLARM-GIDETTAEMVIGH-IPQGIVKVYDQHDRMEERRTALKRWAE 423
             T H  R T R     +        E  + H +       Y +   + +R   +  WA 
Sbjct: 352 GLTQHGFRSTFREWAGEVTAYPREVIEHALAHSLADKAEAAYQRGSLLPKRVKLMADWAT 411

Query: 424 YVERVATVGSNVFALQATKGA 444
           Y   V     NV A++    A
Sbjct: 412 YAGTVQQSAGNVVAIREGSAA 432