Pairwise Alignments

Query, 445 a.a., site-specific integrase from Magnetospirillum magneticum AMB-1

Subject, 423 a.a., putative Phage integrase from Pseudomonas putida KT2440

 Score = 89.0 bits (219), Expect = 3e-22
 Identities = 99/385 (25%), Positives = 164/385 (42%), Gaps = 36/385 (9%)

Query: 59  REISDSGCRGLRLRVSPSGEKVWAVKVTVGAQRVRHTIGAYP-------AVSLGEARKRA 111
           R++   G  GL  R   S E+     +  G   +   IG+YP       A +L + R R 
Sbjct: 17  RDLRALGNHGLYFRFHRSRERGSWYLIHKGKWNL---IGSYPELSAAKVAAALPDIRLRL 73

Query: 112 EAYLATARDGASPDE-LDARQRAETMTVTMAHSEYIEAMRSSLRASTISLKKTMFKTHVE 170
           EA      +G+S    +   +  +     M+    + A R    AS I       K H+ 
Sbjct: 74  EA-----GEGSSLSSWVLTGELLDWFAERMSRDRSLSAKRKRTAASAI-------KQHLA 121

Query: 171 GALGKRLIRTVRRSDVVDVVGGVSAKGFPVQANRVFSEVMAL-LRWCEQKGYVDGVPSA- 228
             LG+  +  + ++ +   +     +   +   R+  +++AL  R   + G +   P A 
Sbjct: 122 PRLGETPLAQIDKALLDRELMWPLQESLSIDYVRLVFQLLALAFRQAAKLGLISTNPMAG 181

Query: 229 -RKKDVRAATGGAKELARRRVLSEGEIIAVWNLTANMGDLTGDFLRLLLLTGQRRDEVRL 287
            R +D   A    K    R V  E +++A    T       G    ++L  G R  E R+
Sbjct: 182 IRFRDFSKAKVTVKPSRLRGVHLE-DLMARMKSTLAHNPQHGLLALMMLCHGTRLGETRM 240

Query: 288 MVWGEVDMDASLWTIPASRYKTGYSHTVPLPKQAMDILRS----RWVEGATGYVLAGRGE 343
             W  + +    W IPA   KTG  H +PL  Q   +L +    +  +G  G  L    +
Sbjct: 241 ARWSHISLAEREWFIPAEHTKTGVQHRLPLTDQVRFLLMACREIQLKQGYEGEFLFPGRQ 300

Query: 344 NKPFNGA-ASAVRRLRKELGGKADFTLHDIRRTLRTGLARMGIDETTAEMVIGHIPQGIV 402
            KP + + ASAV  +     G+ ++T HD+R+  RTG A +G+D    E++I H     V
Sbjct: 301 GKPMSESKASAVFSVM----GQGEWTSHDLRKLARTGWADLGVDHLVGELLINHAMGHNV 356

Query: 403 KVYDQHDRMEERRTALKRWAEYVER 427
           KVY Q D M  +R AL++W  ++++
Sbjct: 357 KVYIQSDVMARKREALEKWHAHLDQ 381