Pairwise Alignments

Query, 445 a.a., site-specific integrase from Magnetospirillum magneticum AMB-1

Subject, 402 a.a., CPZ-55 prophage; predicted integrase (RefSeq) from Escherichia coli BW25113

 Score =  115 bits (287), Expect = 3e-30
 Identities = 100/384 (26%), Positives = 176/384 (45%), Gaps = 17/384 (4%)

Query: 60  EISDSGCRGLRLRVSPSGEKVWAVKVTVGAQRVRHTIGAYPAVSLGEARKRAEAYLATAR 119
           +++DS   GL L V P+G K W  +  +  +     IG YP ++L EAR+RA    +   
Sbjct: 22  KLTDSLTPGLFLLVHPNGSKYWRFRYWLNKREFLQAIGVYPLITLKEARRRATESRSLIA 81

Query: 120 DGASPDELDARQRAETMTVTMA------HSEYIEAMRSSLRASTISLKKTMFKTHVEGAL 173
           +G +P E  AR+      + MA        ++          S     ++  +  V   L
Sbjct: 82  NGINPVE-QARKEKAIDALNMAAGFKKVAEDWFATRVGGWSESYAKQVRSALEKDVYPVL 140

Query: 174 GKRLIRTVRRSDVVDVVGGVSAKGFPVQANRVFSEVMALLRWCEQKGYVDGVPSARKKDV 233
           GKR I  +   DV+ ++     +  P QA ++   +  + ++      V   P A   D+
Sbjct: 141 GKRSIVDITARDVLALL-QKKERTAPEQARKLRRRIGEIFKFAVITELVTRNPVA---DL 196

Query: 234 RAATGGAKELARRRVLSEGEIIAVWNLTANMGDL-TGDFLRLLLLTGQRRDEVRLMVWGE 292
             A   A+       +   EI A +      G +     +RLL+LT  R  E+RL  W  
Sbjct: 197 DTAL-KARRPGHNAWIPISEIPAFYKALERAGSVQIQTAIRLLILTALRTAELRLCRWEW 255

Query: 293 VDMDASLWTIPASRYKTGYSHTVPLPKQAMDILRSRWV-EGATGYVLAGRGENKPFNGAA 351
           ++++ +  T+PA   K    H VPL +QA+++L+ ++   G + +V  GR  +KP   +A
Sbjct: 256 INLEDATITLPAEVMKARRPHVVPLSRQAVELLQDQFTRSGYSAFVFPGRFMDKPL--SA 313

Query: 352 SAVRRLRKELGGKADFTLHDIRRTLRTGLARMG-IDETTAEMVIGHIPQGIVKVYDQHDR 410
           SA+ +  + +G K+  T H  R T  T L   G       E+ + H+P+GI  VY+Q   
Sbjct: 314 SAILKALERIGYKSIATGHGWRTTFSTALNESGRYSPDWIEIQLAHVPKGIRGVYNQAAY 373

Query: 411 MEERRTALKRWAEYVERVATVGSN 434
           +++RR  ++ +A+ ++ +     N
Sbjct: 374 LKQRRAMMQDYADAIDSILAGNGN 397