Pairwise Alignments

Query, 603 a.a., methyl-accepting chemotaxis protein from Magnetospirillum magneticum AMB-1

Subject, 795 a.a., HAMP domain-containing protein from Magnetospirillum magneticum AMB-1

 Score =  343 bits (879), Expect = 2e-98
 Identities = 210/465 (45%), Positives = 289/465 (62%), Gaps = 16/465 (3%)

Query: 154 IDELSRLLGDYDREIAKIKVSSGRAASLDNAETAAAAPAAAAIATKLDLVGED--LAANF 211
           +DE+++   D+++ ++   V +    ++ N          AA    L +VG+   LA+++
Sbjct: 191 LDEMAQNYVDFEKALSVSAVPARDRPAILNLLADYRRDFTAAAEASLAMVGDGTVLASSY 250

Query: 212 HQV-------------ALEVQAGAERQIDEAIDASLL-VGSLSVILGLVLSFFIGRSISA 257
             V             A++V      Q DE     +L V +    + +V+   I RSI  
Sbjct: 251 ASVQPLIDALDDEALTAMKVAKERAHQADETAGRMMLSVMASGFAIMVVIGTLIARSIYG 310

Query: 258 PVIAMTNAMEALAAGDTTIHVPATGNRDEIGDMAKAVQVFKDNAIRVAALQTEQAEAKAR 317
           P+ AMT  M  LA  + ++ VP T   DE+G MAK+V  FKD  IRV  L+  Q E K R
Sbjct: 311 PITAMTGVMGELAGDNLSVTVPFTDRGDELGGMAKSVGHFKDQLIRVRQLEAAQEEQKRR 370

Query: 318 AEADRRRAMLGMADSFEAQVMGLVKGVSVQATQMEAVSQGVSSAAHQAQAQAGTIAAAAG 377
           AEADR  AM  +AD+FE  V  +++ V+  AT++EA S  ++  A +  +QA T+A+AA 
Sbjct: 371 AEADRLAAMRKLADTFEGSVGKVIETVTSAATELEAASGQMAGTATETSSQATTVASAAQ 430

Query: 378 QATGNVQAVAAAAEELSSSISEIGRQVADAASISRQAAEETERTNDMVRALAEAAGRIDQ 437
           QA+ NVQ VA+A EEL+SSI EI  QV  + ++S  A +E   T   V+AL+   G+I +
Sbjct: 431 QASTNVQTVASATEELASSIKEIAHQVERSQAVSHHAGDEAHTTTMQVQALSANVGKIGE 490

Query: 438 VVSLITDIASQTNLLALNATIEAARAGEAGKGFAVVAGEVKNLANQTARATEEIGTQIGA 497
           +V LI DIASQTNLLALNATIEAARAGEAGKGFAVVAGEVK+LANQTA+AT EI  QI A
Sbjct: 491 IVKLINDIASQTNLLALNATIEAARAGEAGKGFAVVAGEVKDLANQTAKATSEIAGQIQA 550

Query: 498 VQEETRRAVEAIRNIGTVIGQVREISGGIADAVEEQSAATAEIARNVQQAVQGTQDVSLN 557
           VQ+ TR AV AI +I  VI ++ EIS  +A AVE+Q+AAT EIARNV+QA +GTQ+V+ N
Sbjct: 551 VQDSTRVAVHAIESISKVIAEMGEISSAVAAAVEQQTAATGEIARNVEQAAEGTQEVTRN 610

Query: 558 IAGVSEAASSTGAASRQMLAGAGELAGNSARLRDEVVRFLDRVRA 602
           I  V +AA  TG A+ Q+   +GEL+  +  LR EV +FL +VR+
Sbjct: 611 IVSVEQAAKETGQAAEQIRESSGELSRQAEFLRHEVGQFLIQVRS 655



 Score = 38.9 bits (89), Expect = 8e-07
 Identities = 55/273 (20%), Positives = 97/273 (35%), Gaps = 20/273 (7%)

Query: 254 SISAPVIAMTNAMEALAAGDTTIHVPATGNRDEIGDMAKAVQVFKDNAIRVA-------- 305
           S+   +  +T+A   L A    +   AT    +   +A A Q    N   VA        
Sbjct: 389 SVGKVIETVTSAATELEAASGQMAGTATETSSQATTVASAAQQASTNVQTVASATEELAS 448

Query: 306 -----ALQTEQAEAKARAEADRRRAMLGMADSFEAQV--MG-LVKGVSVQATQMEAVSQG 357
                A Q E+++A +    D          +  A V  +G +VK ++  A+Q   ++  
Sbjct: 449 SIKEIAHQVERSQAVSHHAGDEAHTTTMQVQALSANVGKIGEIVKLINDIASQTNLLALN 508

Query: 358 VSSAAHQAQAQAGTIAAAAGQATGNVQAVAAAAEELSSSISEIGRQVADAA----SISRQ 413
            +  A +A       A  AG+        A A  E++  I  +      A     SIS+ 
Sbjct: 509 ATIEAARAGEAGKGFAVVAGEVKDLANQTAKATSEIAGQIQAVQDSTRVAVHAIESISKV 568

Query: 414 AAEETERTNDMVRALAEAAGRIDQVVSLITDIASQTNLLALNATIEAARAGEAGKGFAVV 473
            AE  E ++ +  A+ +      ++   +   A  T  +  N       A E G+    +
Sbjct: 569 IAEMGEISSAVAAAVEQQTAATGEIARNVEQAAEGTQEVTRNIVSVEQAAKETGQAAEQI 628

Query: 474 AGEVKNLANQTARATEEIGTQIGAVQEETRRAV 506
                 L+ Q      E+G  +  V+ E +  V
Sbjct: 629 RESSGELSRQAEFLRHEVGQFLIQVRSEKKDMV 661