Pairwise Alignments

Query, 342 a.a., DNA-binding transcriptional regulator CytR from Serratia liquefaciens MT49

Subject, 329 a.a., Ribose operon repressor from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  206 bits (524), Expect = 7e-58
 Identities = 110/328 (33%), Positives = 195/328 (59%), Gaps = 3/328 (0%)

Query: 12  MKDVAEMAGVSTATVSRALMNPEKVSTPTRQKVEQAVLAVGYSPHALSRNIKRNESRTIL 71
           MKDVA +AGVST+TVS  +     VS    +KVE A+ ++ Y+P AL+R++K N++RTI 
Sbjct: 1   MKDVARLAGVSTSTVSHVINKDRFVSETITEKVEAAIKSLNYAPSALARSLKLNQTRTIG 60

Query: 72  VIVPDICDPFFADVIQGIEQTAAQQGYLVLIGDCAQQNQQERTFVNLIITKQIDGMLLL- 130
           +++    +PF++++++G+E++  ++GY +++ +     Q+    +  ++ K++DG+LLL 
Sbjct: 61  MLITASTNPFYSELVRGVERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLC 120

Query: 131 -GSNLPFDASKEEQRNLPPMVMA-NEFAPELELPTVHIDNLTAAFEAVHYLHQLGHKQIA 188
             ++ P     E   ++P ++M  + F  E +   +  ++L     A  YL   G  +IA
Sbjct: 121 TETHQPSREIMERYPSIPTVMMDWSPFDGEGDSDLIQDNSLLGGDLATQYLIDKGFTRIA 180

Query: 189 CVAGPEQMPLSHYRLQGYIQALRRNGISVESSYITRGDFTYEAGAQALAALMAQPKPPTA 248
           C+ GP     +  RL+GY  A++R G+++   Y   GDF +  G  A+ AL+A  + P A
Sbjct: 181 CITGPLDKTPARLRLEGYRAAMKRAGLAIPQGYEITGDFEFGGGFDAMQALLAHQQRPQA 240

Query: 249 VFCHSDVMAIGVLSQAKKMGLRVPQDLSIVGFDDIKLAQYCDPPLTTVAQPRYQIGQQAM 308
           VF  +D MA+G      + GLR+PQD+ ++G+DDI+LA+Y  PPLTT+ QP+ ++G+ A+
Sbjct: 241 VFTGNDAMAVGAYQALYQAGLRIPQDMVVIGYDDIELARYMTPPLTTIHQPKDELGELAI 300

Query: 309 LLLLEQLHGQNVASGSRLLDSELIIRGS 336
            +L+ ++    +      L   L +RGS
Sbjct: 301 DVLIHRMAQPALQQQRLQLTPVLTVRGS 328