Pairwise Alignments

Query, 517 a.a., sugar ABC transporter ATP-binding protein from Serratia liquefaciens MT49

Subject, 505 a.a., ABC transporter, nucleotide binding/ATPase protein (ribose) from Agrobacterium fabrum C58

 Score =  308 bits (790), Expect = 2e-88
 Identities = 175/494 (35%), Positives = 295/494 (59%), Gaps = 8/494 (1%)

Query: 10  ILTLSHIVKRFGGNVAVNDVSLQVMPGEVLALLGENGAGKSTLIKVLAGVYPRDGGDIQF 69
           +L L +I K F G  A+++V   +  GEV A+ GENGAGKSTL+K+++GVY    G I  
Sbjct: 9   LLRLENISKEFPGVKALSNVHFDLRSGEVHAVCGENGAGKSTLMKIISGVYQPSEGTILH 68

Query: 70  QGTSIASAAAIKSDSRQPIAFIHQDLGLIEWMTVAENMALVMGFPRRFGLIDWRAIRRRA 129
           +G  +  A+ ++S++   IA IHQ+L L+  ++VAEN+ L    PRR  L+D + +R  A
Sbjct: 69  KGEKVQYASPLQSEAAG-IAIIHQELNLVPHLSVAENIYLARE-PRRGFLVDRKKLRLDA 126

Query: 130 AQALQDVGIALDPDARVFELSRTEKSLLAIARAVAVNAELLVLDEPTASLPANDVRHLFA 189
            + L  +G+ ++PD  V  LS  +  ++ IA+A++++AE+L++DEPT+SL   + R LF 
Sbjct: 127 KRCLDRLGVDINPDQLVRSLSVAQCQMVEIAKALSLDAEVLIMDEPTSSLTEQETRLLFK 186

Query: 190 VINRLRDKKVGMIYVTHRLDEVIEIADRVCVMRDGRYVAGGNTADYSLRDLVQMIVGEAM 249
           VI  L+   VG++Y++HRLDE+ EI DRV ++RDGRY++  + A  ++ D+V  +VG ++
Sbjct: 187 VIRDLKASGVGIVYISHRLDEMAEIVDRVTILRDGRYISTDDFASITVDDIVTRMVGRSL 246

Query: 250 AEDQREPLPENQPPVLQLNHVVV--GDIGPVSFNLQPGEMLALAGLRGAGQEEIGRLLFG 307
            +   E        +L     +   G    VSF+L+ GE+L  AGL GAG+ E+ R +FG
Sbjct: 247 EDKFPERTSRPTDDILFSVEGLTRNGVFSDVSFSLRRGEILGFAGLMGAGRTEVARAIFG 306

Query: 308 LRHADEGEIRFRDQPYSASSPQQAMACGVSLVAGDRTGESLVMSMSVRENLFINPC--AS 365
               D G+I F  +  S  SPQ A+  G++ ++ DR  + L + MSV  N  +      S
Sbjct: 307 ADPLDAGKIVFNGRELSIGSPQDAIEEGIAYLSEDRKSDGLAIKMSVAANTTLANLGEVS 366

Query: 366 GHKLLSRYSRRAEIGASWWKVQLFDVRPKDVNIDISALSGGNQQKVVMARWMHLGAPLLI 425
               L  + +  ++   +  V L ++R   ++  +  LSGGNQQK+++ +W+   + +L 
Sbjct: 367 NRFGLIDFKKHDDVAKRY--VDLLNIRTPSIDQTVRLLSGGNQQKIIIGKWLFRQSRVLF 424

Query: 426 LEDPTAGVDVGARAEIYHLLNKSLADGIAVLVISNDFEEIAHICNRALVFNRGKVVGELK 485
            ++PT G+DVGA+  IY ++++  A GI V++IS++  EI  + +R  VF++G++ G L+
Sbjct: 425 FDEPTRGIDVGAKFAIYKIMDELAAQGIGVILISSELPEILGLTDRIAVFHQGRITGVLE 484

Query: 486 NQQVSFANLLELAS 499
             + +   ++  AS
Sbjct: 485 TAKTNQEEIMRYAS 498



 Score = 83.2 bits (204), Expect = 2e-20
 Identities = 65/256 (25%), Positives = 119/256 (46%), Gaps = 11/256 (4%)

Query: 3   PDNAEQPILTLSHIVKRFGGNVAVNDVSLQVMPGEVLALLGENGAGKSTLIKVLAGVYPR 62
           P+   +P   +   V+    N   +DVS  +  GE+L   G  GAG++ + + + G  P 
Sbjct: 251 PERTSRPTDDILFSVEGLTRNGVFSDVSFSLRRGEILGFAGLMGAGRTEVARAIFGADPL 310

Query: 63  DGGDIQFQGTSIASAAAIKSDSRQPIAFIHQDL---GLIEWMTVAENMALV-MG-FPRRF 117
           D G I F G  + S  + +    + IA++ +D    GL   M+VA N  L  +G    RF
Sbjct: 311 DAGKIVFNGREL-SIGSPQDAIEEGIAYLSEDRKSDGLAIKMSVAANTTLANLGEVSNRF 369

Query: 118 GLIDWRA---IRRRAAQALQDVGIALDPDARVFELSRTEKSLLAIARAVAVNAELLVLDE 174
           GLID++    + +R    L     ++D   R+  LS   +  + I + +   + +L  DE
Sbjct: 370 GLIDFKKHDDVAKRYVDLLNIRTPSIDQTVRL--LSGGNQQKIIIGKWLFRQSRVLFFDE 427

Query: 175 PTASLPANDVRHLFAVINRLRDKKVGMIYVTHRLDEVIEIADRVCVMRDGRYVAGGNTAD 234
           PT  +       ++ +++ L  + +G+I ++  L E++ + DR+ V   GR      TA 
Sbjct: 428 PTRGIDVGAKFAIYKIMDELAAQGIGVILISSELPEILGLTDRIAVFHQGRITGVLETAK 487

Query: 235 YSLRDLVQMIVGEAMA 250
            +  ++++   G   A
Sbjct: 488 TNQEEIMRYASGYGRA 503