Pairwise Alignments

Query, 407 a.a., integrase arm-type DNA-binding domain-containing protein from Serratia liquefaciens MT49

Subject, 394 a.a., integrase from Pseudomonas simiae WCS417

 Score = 92.4 bits (228), Expect = 2e-23
 Identities = 75/280 (26%), Positives = 119/280 (42%), Gaps = 9/280 (3%)

Query: 1   MALSDSFLKSKLGKARDKIEEKSDRDGLWVRISVKGSVTFFYRYRLNGKADKVTIGSYPA 60
           MAL+D+   +K  K R+      D  GL + ++  G  ++ +R+   GK  +++IG+YP 
Sbjct: 1   MALTDT--AAKQAKPRENGYTIPDSLGLSLYVAPSGVKSWHFRFTWLGKQVRISIGTYPE 58

Query: 61  VGLKDARAEAARFSALVANGDSPKHSKLIDE----TRRGQSFESLYREWHGLLKSTTVTG 116
            GLK+ARA        +ANG  P+ S+   +       GQ+F  +Y EW    K +   G
Sbjct: 59  TGLKEARARRDEAREDIANGVDPRDSRREKKAGMIAAGGQTFRRVYDEWLAFRKGSISPG 118

Query: 117 DQ--ILRTFEIHIFPVIGDLPASRITIHTWITALEKVAK-SQAETTVKLISNAKRCYSWA 173
               I     + + P +GD     I     I  + +V K     T VK+     + +S+A
Sbjct: 119 TYRVISNAMALDVLPTLGDRQIDAIKRADVIALIRRVEKRGSVATAVKVRQRMSQVFSYA 178

Query: 174 KKRQLVDENPLLEINASDFGIKPKSVDRSLSAEEIAIAWHAIDGGRITQSNKDLIRLCLF 233
               +++ NP  E++A    +        L   E+     AI      Q  K  + L ++
Sbjct: 179 IATGVIEANPTAEMHAVTEKMGQHKPHPFLPFSEMPRIMAAIRDCASGQQLKAALMLMIY 238

Query: 234 YGCRVGELRMAEEGHFDFDKMTWTVPPENHKTGLDTKRPI 273
              R GE+R AE    D D   WT P    K   D   P+
Sbjct: 239 TASRPGEVRHAEWSEIDLDAAIWTTPAAKMKMRRDHAVPL 278