Pairwise Alignments

Query, 316 a.a., branched-chain amino acid ABC transporter permease from Serratia liquefaciens MT49

Subject, 304 a.a., branched-chain amino acid transporter permease subunit LivH from Pseudomonas simiae WCS417

 Score =  239 bits (609), Expect = 8e-68
 Identities = 136/313 (43%), Positives = 198/313 (63%), Gaps = 17/313 (5%)

Query: 5   VQQTVNGLMLGSIYALIALGYTMVYGILRIINFAHGDVLMVGALSALSAIGVLQHHFPTL 64
           +QQ VNGL LGS+Y LIA+GYTMVYGI+ +INFAHG+V M+ A  A  ++ +L +    +
Sbjct: 6   LQQLVNGLTLGSVYGLIAIGYTMVYGIIGMINFAHGEVYMISAYLAAISLALLAYF--GI 63

Query: 65  SPYVTLLLAALI-AMAVCSLVSMSIERLAYRRLRNAPRLAPLISGIGVSLLLQTLAMLIW 123
             +  L+L  LI  + V  +    IER+AY+ LRN+ RLAPLIS IG+SL+LQ  A +  
Sbjct: 64  ESFPLLILGTLIFTVVVTGVYGWVIERVAYKPLRNSTRLAPLISAIGISLILQNYAQIAQ 123

Query: 124 SRNPLMFPQLLPME-PIALTSGSANHAPAVITGTGIATLAIALLVMAGLLLLVEHSRFGR 182
                  P LL     + + SG        +T T +  L  A   MA L  ++++++ GR
Sbjct: 124 GAKQQGIPTLLAGAWRVDIGSGFVQ-----LTYTKVFILVAAFAGMALLTYVIKYTKLGR 178

Query: 183 AMRATAENPQVAGLMGIEPNRIIVLTFALGGALAAVAGIMMASNYGNAGFSMGFLPGIKA 242
             RAT ++ ++A ++GI  +R+I   F +G A+AA+AG+++  NYG   F  GF+ GIKA
Sbjct: 179 MCRATQQDRKMASILGINTDRVISYVFVIGAAMAALAGVLITLNYGTFDFYAGFIIGIKA 238

Query: 243 FTAAVLGGIGNLRGAMLGGLLLGLFESLGTGYLGELTGGTFGSNYQDVFAFLILIAVLVF 302
           FTAAVLGGIG+L GAMLGG++LG+ ESL +G +         S+Y+DVF+F +L+ +L+F
Sbjct: 239 FTAAVLGGIGSLPGAMLGGIILGISESLFSGLI--------NSDYKDVFSFSLLVVILIF 290

Query: 303 RPSGLLGERVATR 315
           RP GLLG  +  +
Sbjct: 291 RPQGLLGRPLVAK 303