Pairwise Alignments

Query, 316 a.a., branched-chain amino acid ABC transporter permease from Serratia liquefaciens MT49

Subject, 304 a.a., High-affinity branched-chain amino acid transport system permease protein BraD from Pseudomonas putida KT2440

 Score =  238 bits (608), Expect = 1e-67
 Identities = 135/312 (43%), Positives = 197/312 (63%), Gaps = 15/312 (4%)

Query: 5   VQQTVNGLMLGSIYALIALGYTMVYGILRIINFAHGDVLMVGALSALSAIGVLQHHFPTL 64
           +QQ VNGL LGS+Y LIA+GYTMVYGI+ +INFAHG+V M+ A  A  ++ +L + F   
Sbjct: 6   LQQLVNGLTLGSVYGLIAIGYTMVYGIIGMINFAHGEVYMISAYLAAISLALLAY-FGVE 64

Query: 65  SPYVTLLLAALIAMAVCSLVSMSIERLAYRRLRNAPRLAPLISGIGVSLLLQTLAMLIWS 124
           S  + +L   L  + V  +   +IER+AY+ LRN+ RLAPLIS IG+SL+LQ  A +   
Sbjct: 65  SFPLLMLGTLLFTIVVTGVYGFTIERIAYKPLRNSTRLAPLISAIGISLILQNYAQISQG 124

Query: 125 RNPLMFPQLLP-MEPIALTSGSANHAPAVITGTGIATLAIALLVMAGLLLLVEHSRFGRA 183
                 P LL     + + SG        +T T I  L  A + M  L  ++++++ GR 
Sbjct: 125 ARQQGVPTLLEGAMRVEVGSGFVQ-----LTYTKIFILVAAFVGMGLLTYVIKYTKLGRM 179

Query: 184 MRATAENPQVAGLMGIEPNRIIVLTFALGGALAAVAGIMMASNYGNAGFSMGFLPGIKAF 243
            RAT ++ ++A ++GI  +R+I   F +G  +AA+AG+++  NYG   F  GF+ GIKAF
Sbjct: 180 CRATQQDRKMASILGINTDRVISYVFVIGAVMAALAGVLITMNYGTFDFYAGFIIGIKAF 239

Query: 244 TAAVLGGIGNLRGAMLGGLLLGLFESLGTGYLGELTGGTFGSNYQDVFAFLILIAVLVFR 303
           TAAVLGGIG+L GAMLGG++LG+ ESL +G +         S+Y+DVF+F +L+ +L+FR
Sbjct: 240 TAAVLGGIGSLPGAMLGGIILGISESLFSGLI--------NSDYKDVFSFSLLVMILIFR 291

Query: 304 PSGLLGERVATR 315
           P GLLG  +  +
Sbjct: 292 PQGLLGRPLVAK 303