Pairwise Alignments

Query, 316 a.a., branched-chain amino acid ABC transporter permease from Serratia liquefaciens MT49

Subject, 308 a.a., High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  228 bits (582), Expect = 1e-64
 Identities = 135/307 (43%), Positives = 189/307 (61%), Gaps = 16/307 (5%)

Query: 5   VQQTVNGLMLGSIYALIALGYTMVYGILRIINFAHGDVLMVGALSALSAIGVLQHHFPTL 64
           +QQ  NG+ LGS YALIA+GYTMVYGI+ +INFAHG+V M+G+  +   I  L       
Sbjct: 9   LQQMFNGVTLGSTYALIAIGYTMVYGIIGMINFAHGEVYMIGSYVSFMIIAALMMMGIDT 68

Query: 65  SPYVTLLLAA--LIAMAVCSLVSMSIERLAYRRLRNAPRLAPLISGIGVSLLLQTLAMLI 122
           S    LL+AA  + A+ + S    SIER+AYR +RN+ RL  LIS IG+S+ LQ    L 
Sbjct: 69  S---WLLVAAGFIGAIIIASAYGWSIERVAYRPVRNSKRLIALISAIGMSIFLQNYVSLT 125

Query: 123 WSRNPLMFPQLLPMEPIALTSGSANHAPAVITGTGIATLAIALLVMAGLLLLVEHSRFGR 182
                +  P L   + I    GS+ +  A IT        +  L M  L + + +SR GR
Sbjct: 126 EGSRDVALPSLFNGQWIV---GSSENFSASITTMQAVIWIVTFLAMLALTIFIRYSRMGR 182

Query: 183 AMRATAENPQVAGLMGIEPNRIIVLTFALGGALAAVAGIMMASNYGNAGFSMGFLPGIKA 242
           A RA AE+ ++A L+GI  +R+I LTF +G A+AAVAG+++   YG     +GF+ G+KA
Sbjct: 183 ACRACAEDLKMASLLGINTDRVIALTFVIGAAMAAVAGVLLGQFYGVINPYIGFMAGMKA 242

Query: 243 FTAAVLGGIGNLRGAMLGGLLLGLFESLGTGYLGELTGGTFGSNYQDVFAFLILIAVLVF 302
           FTAAVLGGIG++ GAM+GGL+LG+ E+L + YL         + Y+DV +F +LI VL+ 
Sbjct: 243 FTAAVLGGIGSIPGAMIGGLILGVAEALSSAYL--------STEYKDVVSFALLILVLLV 294

Query: 303 RPSGLLG 309
            P+G+LG
Sbjct: 295 MPTGILG 301