Pairwise Alignments

Query, 688 a.a., formate hydrogenlyase transcriptional activator FlhA from Serratia liquefaciens MT49

Subject, 441 a.a., fused DNA-binding response regulator in two-component regulatory system with ZraS: response regulator/sigma54 interaction protein (NCBI) from Escherichia coli BW25113

 Score =  271 bits (692), Expect = 6e-77
 Identities = 151/331 (45%), Positives = 215/331 (64%), Gaps = 7/331 (2%)

Query: 353 LKESLVHENLYLTEQINGNNPDFGEIVGRSVVMSAVLKQVEMVAKSDCSVLILGETGTGK 412
           L+++L H +    E        FG +VG+S  M  +L ++ +VA S+ +VLI G++GTGK
Sbjct: 117 LEKALAHTHSIDAETPAVTASQFG-MVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGK 175

Query: 413 ELIARAIHNLSERRDQRMVKMNCAVMPAGLLESDLFGHEKGAFTGATNQRMGRFELADKG 472
           EL+ARAIH  S R ++ +V +NCA +   LLES+LFGHEKGAFTGA  +R GRF  AD G
Sbjct: 176 ELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGG 235

Query: 473 TLFLDEVGEIPVELQPKLLRVLQEREFERVGGNKVISVDVRLIAATNRDLQQMVADREFR 532
           TLFLDE+G+I   +Q +LLR +QERE +RVG N++ISVDVRLIAAT+RDL   V    FR
Sbjct: 236 TLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQIISVDVRLIAATHRDLAAEVNAGRFR 295

Query: 533 SDLFYRLNVFPIVIPPLRERPEDIPQLVKFLTYKIARRMKRTIDSIPAETLRLLSQMPWP 592
            DL+YRLNV  I +P LR+R EDIP L      + A R ++ +     + + LL    WP
Sbjct: 296 QDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWP 355

Query: 593 GNVRELENVIERAVLLTRGTVLNLQLPELQYPVPSMALPVPKAEPSQP-GEDERQQIIRV 651
           GN+RELEN +ERAV+L  G  ++ +  EL   + S  +P+ +++  QP  E E++ I+  
Sbjct: 356 GNIRELENAVERAVVLLTGEYISER--ELPLAIASTPIPLGQSQDIQPLVEVEKEVILAA 413

Query: 652 LKETNGVVAGPRGAAQRLGLKRTTLLSRMKK 682
           L++T G       AA++LG+ R TLL+++ +
Sbjct: 414 LEKTGG---NKTEAARQLGITRKTLLAKLSR 441