Pairwise Alignments

Query, 688 a.a., formate hydrogenlyase transcriptional activator FlhA from Serratia liquefaciens MT49

Subject, 692 a.a., DNA-binding transcriptional activator (NCBI) from Escherichia coli BW25113

 Score =  793 bits (2048), Expect = 0.0
 Identities = 418/682 (61%), Positives = 507/682 (74%), Gaps = 2/682 (0%)

Query: 4   AQLEKQELLEITRTLLSQRSFTDLLLQLRQILQRLQLADQVTLVLFDPDSERVSFYGLDA 63
           + L +Q L +ITRTLL Q     L   L Q+++R  LAD   +VL+   ++R S+Y    
Sbjct: 7   SDLGQQGLFDITRTLLQQPDLASLCEALSQLVKRSALADNAAIVLWQAQTQRASYYASRE 66

Query: 64  HRQPVSYQDETLLANGPVSRLRQSPLPQRWQSDDLHARYPQIGALALYLPFNQYCLMPLH 123
              P+ Y+DET+LA+GPV  +   P       ++    +PQ+ A  LY  F  YCLMPL 
Sbjct: 67  KDTPIKYEDETVLAHGPVRSILSRPDTLHCSYEEFCETWPQLDAGGLYPKFGHYCLMPLA 126

Query: 124 AGGTLIGGCEVLRCHSAPFADASLVQLQTLMELVALAAEQLLLREEAELRQRQLRHERDD 183
           A G + GGCE +R    P+++    +LQT  ++V++  EQ+  R    +    L  ERD+
Sbjct: 127 AEGHIFGGCEFIRYDDRPWSEKEFNRLQTFTQIVSVVTEQIQSRVVNNVDYELLCRERDN 186

Query: 184 YRILVDVTNAVLSKLDLDDLIGEISKEIHRFFKIDAISIVLCVDKTEQVTIYSTHYLQDD 243
           +RILV +TNAVLS+LD+D+L+ E++KEIH +F ID ISIVL   +  ++ IYSTHYL   
Sbjct: 187 FRILVAITNAVLSRLDMDELVSEVAKEIHYYFDIDDISIVLRSHRKNKLNIYSTHYLDKQ 246

Query: 244 VVERQQYSVALAGTLSEQVMQSGEMLLLNLKHSDRLAAYERQLFDLWHEQIQTLCVLPLV 303
               +Q  V  AGTL+E+V +S EMLL+NL   D LA YER LFD W  QIQTLC+LPL+
Sbjct: 247 HPAHEQSEVDEAGTLTERVFKSKEMLLINLHERDDLAPYERMLFDTWGNQIQTLCLLPLM 306

Query: 304 FGNKTLGVLKLAQCQPDNFNAANLRVLQQIAERIAIAVDNALAYQEINRLKESLVHENLY 363
            G+  LGVLKLAQC+   F   NL +L+QIAER+AIAVDNALAYQEI+RLKE LV ENL 
Sbjct: 307 SGDTMLGVLKLAQCEEKVFTTTNLNLLRQIAERVAIAVDNALAYQEIHRLKERLVDENLA 366

Query: 364 LTEQINGNNPDFGEIVGRSVVMSAVLKQVEMVAKSDCSVLILGETGTGKELIARAIHNLS 423
           LTEQ+N  + +FGEI+GRS  M +VLKQVEMVA+SD +VLILGETGTGKELIARAIHNLS
Sbjct: 367 LTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLS 426

Query: 424 ERRDQRMVKMNCAVMPAGLLESDLFGHEKGAFTGATNQRMGRFELADKGTLFLDEVGEIP 483
            R ++RMVKMNCA MPAGLLESDLFGHE+GAFTGA+ QR+GRFELADK +LFLDEVG++P
Sbjct: 427 GRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMP 486

Query: 484 VELQPKLLRVLQEREFERVGGNKVISVDVRLIAATNRDLQQMVADREFRSDLFYRLNVFP 543
           +ELQPKLLRVLQE+EFER+G NK+I  DVRLIAATNRDL++MVADREFRSDL+YRLNVFP
Sbjct: 487 LELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFP 546

Query: 544 IVIPPLRERPEDIPQLVKFLTYKIARRMKRTIDSIPAETLRLLSQMPWPGNVRELENVIE 603
           I +PPLRERPEDIP L K  T+KIARR+ R IDSIPAETLR LS M WPGNVRELENVIE
Sbjct: 547 IHLPPLRERPEDIPLLAKAFTFKIARRLGRNIDSIPAETLRTLSNMEWPGNVRELENVIE 606

Query: 604 RAVLLTRGTVLNLQLPELQYPVPSMALPVPKAEPSQPGEDERQQIIRVLKETNGVVAGPR 663
           RAVLLTRG VL L LP++  P P    P      +  GEDE Q I+RVLKETNGVVAGP+
Sbjct: 607 RAVLLTRGNVLQLSLPDIVLPEPE--TPPAATVVALEGEDEYQLIVRVLKETNGVVAGPK 664

Query: 664 GAAQRLGLKRTTLLSRMKKWGI 685
           GAAQRLGLKRTTLLSRMK+ GI
Sbjct: 665 GAAQRLGLKRTTLLSRMKRLGI 686