Pairwise Alignments

Query, 688 a.a., formate hydrogenlyase transcriptional activator FlhA from Serratia liquefaciens MT49

Subject, 670 a.a., putative 2-component regulator, interaction with sigma 54 (VIMSS) from Escherichia coli BW25113

 Score =  513 bits (1322), Expect = e-150
 Identities = 292/567 (51%), Positives = 382/567 (67%), Gaps = 17/567 (2%)

Query: 135 LRCHSAPFADASLVQLQTLMELVALAAEQLLLREEAELRQRQLRHERDDYRILVDVTNAV 194
           +R H + F          L  ++    +  L  EE ++  R L  +RD +R+LVD+TNAV
Sbjct: 105 IRTHGSRFTSQDCTLFNWLARIITPVLQSWLNDEEQQVALRLLEKDRDHHRVLVDITNAV 164

Query: 195 LSKLDLDDLIGEISKEIHRFFKIDAISIVLCVD-KTEQVTIYSTHYLQDDVVERQQYSVA 253
           LS LDLDDLI ++++EIH FF + ++S+VL    K E+ +++ +  L           + 
Sbjct: 165 LSHLDLDDLIADVAREIHHFFGLASVSMVLGDHRKNEKFSLWCSD-LSASHCACLPRCMP 223

Query: 254 LAGTLSEQVMQSGEMLLLNLKHSDRLAAYERQ--LFDLWHEQIQTLCVLPLVFGNKTLGV 311
               L  Q +Q+ +  L +   +D L  ++R   L  L     ++  ++PL FGN T G 
Sbjct: 224 GESVLLTQTLQTRQPTLTH--RADDLFLWQRDPLLLLLASNGCESALLIPLTFGNHTPGA 281

Query: 312 LKLAQCQPDNFNAANLRVLQQIAERIAIAVDNALAYQEINRLKESLVHENLYLTEQINGN 371
           L LA      F+  N ++LQ IA+RIAIAV NA A++ +  L+ESL  EN  L+EQ+  +
Sbjct: 282 LLLAHTSSTLFSEENCQLLQHIADRIAIAVGNADAWRSMTDLQESLQQENHQLSEQLL-S 340

Query: 372 NPDFGEIVGRSVVMSAVLKQVEMVAKSDCSVLILGETGTGKELIARAIHNLSERRDQRMV 431
           N   G+I+ +S  M  +L+QV++VAKSD +VLI GETGTGKE+IARAIH LS RRD+ +V
Sbjct: 341 NLGIGDIIYQSQAMEDLLQQVDIVAKSDSTVLICGETGTGKEVIARAIHQLSPRRDKPLV 400

Query: 432 KMNCAVMPAGLLESDLFGHEKGAFTGATNQRMGRFELADKGTLFLDEVGEIPVELQPKLL 491
           K+NCA +PA LLES+LFGH+KGAFTGA N   GRFE+AD GTLFLDE+G++P+ELQPKLL
Sbjct: 401 KINCAAIPASLLESELFGHDKGAFTGAINTHRGRFEIADGGTLFLDEIGDLPLELQPKLL 460

Query: 492 RVLQEREFERVGGNKVISVDVRLIAATNRDLQQMVADREFRSDLFYRLNVFPIVIPPLRE 551
           RVLQERE ER+GG++ I V+VR+IAATNRDL QMV DR+FRSDLFYRLNVFP+ +PPLR+
Sbjct: 461 RVLQEREIERLGGSRTIPVNVRVIAATNRDLWQMVEDRQFRSDLFYRLNVFPLELPPLRD 520

Query: 552 RPEDIPQLVKFLTYKIARRMKRTIDSIPAETLRLLSQMPWPGNVRELENVIERAVLLTRG 611
           RPEDIP L K  T K+AR M R ID+IP E LR L    WPGNVRELENVIERAVLLTRG
Sbjct: 521 RPEDIPLLAKHFTQKMARHMNRAIDAIPTEALRQLMSWDWPGNVRELENVIERAVLLTRG 580

Query: 612 TVLNLQ--------LPELQYPVPSMALPVPKAEPSQP--GEDERQQIIRVLKETNGVVAG 661
             LNL         LP L       +       P+ P   E+ERQ+I++VL+ETNG+VAG
Sbjct: 581 NSLNLHLNVRQSRLLPTLNEDSALRSSMAQLLHPTTPENDEEERQRIVQVLRETNGIVAG 640

Query: 662 PRGAAQRLGLKRTTLLSRMKKWGILVK 688
           PRGAA RLG+KRTTLLSRM++ GI V+
Sbjct: 641 PRGAATRLGMKRTTLLSRMQRLGISVR 667