Pairwise Alignments

Query, 688 a.a., formate hydrogenlyase transcriptional activator FlhA from Serratia liquefaciens MT49

Subject, 461 a.a., fused response regulator of ato operon, in two-component system with AtoS: response regulator/sigma54 interaction protein (NCBI) from Escherichia coli BW25113

 Score =  271 bits (692), Expect = 7e-77
 Identities = 151/318 (47%), Positives = 202/318 (63%), Gaps = 10/318 (3%)

Query: 375 FGEIVGRSVVMSAVLKQVEMVAKSDCSVLILGETGTGKELIARAIHNLSERRDQRMVKMN 434
           +G I+  S  M  + K    +A S  SVLI GE+GTGKELIARAIH  S R     +K+N
Sbjct: 142 WGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVN 201

Query: 435 CAVMPAGLLESDLFGHEKGAFTGATNQRMGRFELADKGTLFLDEVGEIPVELQPKLLRVL 494
           CA +P  LLES+LFGHEKGAFTGA   R G FE A++GTL LDE+GE+P+ LQ KLLR+L
Sbjct: 202 CAALPESLLESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEMPLVLQAKLLRIL 261

Query: 495 QEREFERVGGNKVISVDVRLIAATNRDLQQMVADREFRSDLFYRLNVFPIVIPPLRERPE 554
           QEREFER+GG++ I VD+R+IAATNRDLQ MV +  FR DLFYRLNV  +++PPLR+R E
Sbjct: 262 QEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRRE 321

Query: 555 DIPQLVKFLTYKIARRMKRTIDSIPAETLRLLSQMPWPGNVRELENVIERAVLLTRGTVL 614
           DI  L      K +   +R I  I    + LL+   WPGN+REL NVIERAV++  G ++
Sbjct: 322 DISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVIERAVVMNSGPII 381

Query: 615 NLQ--LPELQYPV--PSMALPVPKAEPSQPGEDERQQ---IIRVLKETNGVVAGPRGAAQ 667
             +   P+++ PV         P  E +   E +R +   I+ VL++  G        A 
Sbjct: 382 FSEDLPPQIRQPVCNAGEVKTAPVGERNLKEEIKRVEKRIIMEVLEQQEG---NRTRTAL 438

Query: 668 RLGLKRTTLLSRMKKWGI 685
            LG+ R  L+ +++++GI
Sbjct: 439 MLGISRRALMYKLQEYGI 456



 Score = 30.4 bits (67), Expect = 2e-04
 Identities = 18/80 (22%), Positives = 39/80 (48%), Gaps = 2/80 (2%)

Query: 172 LRQRQLRHERDDYRILVDVTNAVLSKLDLDDLIGEISKEIHRFFKIDAISIVL--CVDKT 229
           L++R+         I VD+     +  DL  ++ E +     F++++ I ++L    D+ 
Sbjct: 261 LQEREFERIGGHQTIKVDIRIIAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRR 320

Query: 230 EQVTIYSTHYLQDDVVERQQ 249
           E +++ + H+LQ    E Q+
Sbjct: 321 EDISLLANHFLQKFSSENQR 340