Pairwise Alignments

Query, 357 a.a., sugar ABC transporter substrate-binding protein from Serratia liquefaciens MT49

Subject, 342 a.a., putative Ribose ABC transporter, periplasmic ribose-binding protein from Pseudomonas putida KT2440

 Score = 92.8 bits (229), Expect = 1e-23
 Identities = 84/300 (28%), Positives = 137/300 (45%), Gaps = 9/300 (3%)

Query: 5   NTSLLALSLFAVFP---ALSAPTAAPIPAAIANHQGPIRIAVIRNLGSDDNTTQFVSGAV 61
           ++++LAL L A      A  A + A   A + + +G  RIA+     S    ++     V
Sbjct: 18  SSAMLALGLAAPLTRAMAAGADSGAEASATVPSLKGK-RIAISTVGTSIYFDSRAFKAQV 76

Query: 62  QEGRKLGFQVNTFLTNGDDAKFQDFVNQAISQKYDGIILSQGRDPYSTALLKRIADSGIA 121
           +E ++LG    T     +D      +   ++ K D +I + G         KRI+ +GI 
Sbjct: 77  EEVQRLGGTPITLDAGRNDKAMVTQLQNLVTLKPDAVIHTLGTLSIIEPWFKRISAAGIP 136

Query: 122 VAAFDTAVQGEIPGVTITQQDDASLTDLSFGQLVKDFNGQANIIKL-WVAGFPPMERRQA 180
           +   +   Q  +  ++    D+ S   L   QLV D  G+  ++      G P    R  
Sbjct: 137 LFTIEVPSQYAVNTISA---DNWSTGLLLAKQLVADLRGKGRVLLFNGFYGVPSCGIRYD 193

Query: 181 QYQKLLKQQPGIKELE-SIGAVSSDVQGDTANKIGAILAKYPKGKIDAIWGTWDAFSQGA 239
           Q + + K  P I+ ++  +  V  +   D  +++ A+L KYPKG++DAIW  WD    GA
Sbjct: 194 QLKLVSKFYPQIEFIQPELRDVIPNTVQDARSQVAALLNKYPKGELDAIWAAWDLPQLGA 253

Query: 240 YKALQENGRTEIKLYSIDISNQDLALMRAKDSAWKLSVAVDPKLIGAVNLRLVANKIGGE 299
            +AL E GR E++ Y +D + + L L+R   S     VA  P LIG   +  VA  + GE
Sbjct: 254 SQALIEAGRNEVRTYGVDGTPEVLELLRQPGSPVAAVVAQQPALIGRTAVHNVARYLAGE 313