Pairwise Alignments

Query, 253 a.a., helix-turn-helix transcriptional regulator from Serratia liquefaciens MT49

Subject, 254 a.a., AraC family transcriptional regulator from Pseudomonas simiae WCS417

 Score =  138 bits (347), Expect = 1e-37
 Identities = 85/239 (35%), Positives = 128/239 (53%), Gaps = 4/239 (1%)

Query: 14  IVPVAKDYQHGEFEPLHYHDCAQLIHSLSGVVQVNTRLGSWVVPPGRGVWLPARVEHSLQ 73
           + P+A+ Y  G +   H HD  QL++++SGV+ V T   + VVPP R VWLP  V H ++
Sbjct: 16  VQPLARTYPRGLYVEPHSHDWGQLLYAMSGVMWVETPREALVVPPQRAVWLPPGVAHGIR 75

Query: 74  ITGKVAARALLVDPLARADLPASCEVVQISPLLRELIICAMDITADYPAGGREERIMELI 133
           +   +  R + + P   A L +  +V+++  LLRELI+  ++   D       + ++ L 
Sbjct: 76  VVSDLQMRNIYLRPALAATLDSQVQVIEVGGLLRELIVTLVE-EGDSGEAAYYDAVVSLA 134

Query: 134 LDELRVL--PILPLNLPEPRSDALLKLCRHIQQSLAHPWELEQAASYINVSGRTLSRRFQ 191
           L EL+      + + +P      L+  C+ I  + +     E  A     S RTLSR FQ
Sbjct: 135 LLELQRARRSQIRIAMPVGVDRRLITACQAIMAAPSLEVAFEHHAETAGASVRTLSRLFQ 194

Query: 192 RETGLRFGDWVRRARLLAALNALAAGHSVLEVALDLGYDSPSAFSAMFRRQLGVAPSTY 250
              G+ F +W R+ +L  A+  L  G SV  +A  LGY SPS+FS MFRR+LGVAPS Y
Sbjct: 195 NNLGMGFAEWRRQVQLATAVAELIQGQSVSAIARSLGY-SPSSFSDMFRRELGVAPSHY 252