Pairwise Alignments

Query, 592 a.a., SmdB family multidrug efflux ABC transporter permease/ATP-binding protein from Serratia liquefaciens MT49

Subject, 582 a.a., lipid A export permease/ATP-binding protein MsbA from Kangiella aquimarina DSM 16071

 Score =  258 bits (659), Expect = 5e-73
 Identities = 173/580 (29%), Positives = 293/580 (50%), Gaps = 22/580 (3%)

Query: 8   WPTLKRLLAYGSPYRKPLGLAVLMLWVAAAAEVAGPILISYFIDN-------YVAKGQLP 60
           W   KRLL +   Y+    + V+   + A  E      I Y ID+       Y    + P
Sbjct: 10  WEIYKRLLGFTKKYKSVFIVGVVANILFALVETYFVNSIKYLIDDGIKARDSYFLLVKTP 69

Query: 61  LMIVCGLAAAYILLELLAAALHYFQALLFNQAAVGVVQRLRTDVMDAALRQPLSAFDTQP 120
           L I+  +        +L    ++            VVQ LR  + +  +RQP   F  + 
Sbjct: 70  LFIMGAI--------MLRGVFNFVSVYCMGWVGRKVVQTLREQLYEHFVRQPTEFFSKRA 121

Query: 121 VGQLISRVTNDTEVIKDLYVMVVSTVLKSAALIGAMLVAMFSLDWRMALVAICIFPAVFV 180
            G L+S +T +TE +       +++ L++   I  ++  M    WR+ L    + P V  
Sbjct: 122 PGNLLSTLTFNTEQVAVASSDAITSALRAGGTIIFIITFMALTSWRLTLFLFILVPVVGW 181

Query: 181 VMGIYQYYSIPIVRRVRSYLADINDGFNEVINGMGVIQQFRQQIRFGERMSAASRSHYTA 240
           V+ +       +   +++ + D+     E I    VI+ F    R  +  +  +  +   
Sbjct: 182 VIKVSARRLKKVSSSIQNVVGDVTRAAEESIKANQVIKIFGGTEREIKNFNKQANRNRQQ 241

Query: 241 RMQTLRLDGFLLRPLLSLFSALVLCGLLMLFGFSG--EGSIGVGVLYAFINYLGRLNEPL 298
            M+ +   G L  P++   + +    + M FG        I  G L +FI  +  +  PL
Sbjct: 242 DMKLIATKG-LASPVIQFIAGIGFAAI-MYFGSQEMLNDRISEGELISFITLMAMILRPL 299

Query: 299 IELTSQQSILQQAVVAGERIFELMDR-RQQSYGTDDRPLESGRIDIEDLSFAYRDDKKVL 357
            E+++  + LQ+ +   + +F+++D   +   GT+      G I+ + +SF Y+ D+KVL
Sbjct: 300 KEVSNVNTHLQRGIAGAQSVFDILDLPNEPDEGTNVIDKAEGSIEFKHVSFGYKPDEKVL 359

Query: 358 QHISLSVPSRGFVALVGHTGSGKSTLANLLMGYYPVNQGEVRLDGRPLASLSHRTLRQGV 417
             IS +VP+   +ALVG +GSGKST+A+LL   Y +NQG++ +DG P+  L+  +LR+ +
Sbjct: 360 NDISFNVPAGQSIALVGKSGSGKSTIASLLQRLYNINQGDLLIDGIPIQDLTLDSLRKQI 419

Query: 418 AMVQQDPVVIAESVLANVTLGR--NISEEIVWQALETVQLAELVRSFPQGIHTRLGEQGN 475
           A V Q  V+  +++  N+  GR   +S+E +  A +     E +   PQG+ T +G+ G 
Sbjct: 420 ATVSQSVVLFNDTIRHNIAYGRMDEVSDEDIISAAKNAHAWEFIEKLPQGLDTIVGDNGV 479

Query: 476 NLSVGQKQLLAMARVLVQAPQILILDEATANIDSGTEQAIQRALRLIREHTTLVVIAHRL 535
            LS GQ+Q +A+AR +++   ILILDEAT+ +D+ +E+ IQ AL  + +  T VV+AHRL
Sbjct: 480 MLSGGQRQRIAIARAMLKDAPILILDEATSALDTESERHIQEALEELMKDRTTVVVAHRL 539

Query: 536 STIVDADSILVLHRGQAVEQGNHQQLLAQQGRYYQMYQLQ 575
           STI +AD ILVL  G  +E G+HQ+LL + G Y ++YQ+Q
Sbjct: 540 STIENADRILVLKDGVIIESGSHQELLDKNGEYTRLYQMQ 579