Pairwise Alignments

Query, 292 a.a., helix-turn-helix domain-containing protein from Serratia liquefaciens MT49

Subject, 295 a.a., MDR efflux pump AcrAB transcriptional activator RobA from Pectobacterium carotovorum WPP14

 Score =  261 bits (668), Expect = 1e-74
 Identities = 137/299 (45%), Positives = 187/299 (62%), Gaps = 12/299 (4%)

Query: 1   MYQQQVIAQLLAWIEANLDQPLTLDDIAAKSGYSKWHLQRLFKQLTGHILGTYARRRRLT 60
           M Q  +I  LL W+E++LDQPL+LD++AAK+GYSKWHLQR+FK +TGH +G+Y R RRLT
Sbjct: 1   MDQAGIIRDLLNWLESHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGSYIRARRLT 60

Query: 61  AAARELRLTHTGVACIADKYQFDSQQTFTRCFKKQFGLPPAGYRRSADWSSHGMQPPLRM 120
            AA  L LT   +  IA +Y+FDSQQTFTR FKKQF   PA YRRS +W++ G++PP+R+
Sbjct: 61  KAAVALCLTSRPILDIALQYRFDSQQTFTRAFKKQFTQTPASYRRSDNWNTFGLRPPIRL 120

Query: 121 AEGPLPQGSIVTLPAMQLVGRTQRRSCTLGQMQHSKNELRQYVWNQVLQPEVAPPAVVYG 180
               LPQ   +TLP  QL+G TQ  +C L Q+ + + E+R + W Q L    + P V+YG
Sbjct: 121 GAFTLPQPQFITLPETQLLGLTQTYNCRLEQICNFRTEIRVHYWRQFLGETCSVPPVLYG 180

Query: 181 LTSLEADNRQLDGQRMAYTLA-----LADEQAEGEQILIEQGDYASFTYQGQVEELPNFV 235
           L        + D   + YT A     L D+   GE + +  GDYA F ++G  +EL +F+
Sbjct: 181 LHHSRPSKEKDDEHEVLYTTALEPQYLPDDVHTGEPVTLPGGDYAMFVFEGPNDELQDFI 240

Query: 236 DRLYDSAMPMMKAVRRPGQDIERFYP---AQGEVCNARGTAIRCEYLIPIRRTSPPAAV 291
             LYD+ +P  +  RR G D ERF+P     GE+       IRCEY IPI+ T P +A+
Sbjct: 241 ISLYDTCLPTFQLTRRKGFDAERFHPNRDTDGEI----PAIIRCEYFIPIQHTEPLSAL 295