Pairwise Alignments

Query, 306 a.a., L,D-transpeptidase YbiS from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 355 a.a., L,D-transpeptidase family protein from Pectobacterium carotovorum WPP14

 Score =  431 bits (1108), Expect = e-125
 Identities = 207/304 (68%), Positives = 239/304 (78%)

Query: 3   MKLTTLFAAAFAVVGFCKTASAVTYPLPTDGSRLIGQNQVITVPEGNTQPLEYFAAEYQM 62
           M +  +F   FA   F + A AV YPLP   SRLIG+N  ITVPE +TQPLE+FA+++QM
Sbjct: 1   MSIRAIFTLVFAAAAFSQAAFAVVYPLPAANSRLIGENIDITVPEDSTQPLEHFASQFQM 60

Query: 63  GLSNMLEANPGVDTFLPKGGTVLNIPQQLILPDTVHEGIIINSAEMRLYYYPKGTNTVIV 122
           GLSN++EANP  D +LP  G+ + IP QLILPD   EGI+INSAEMRLYYYPKG+ TV+V
Sbjct: 61  GLSNLMEANPDADVYLPIPGSKMVIPHQLILPDAPREGIVINSAEMRLYYYPKGSKTVVV 120

Query: 123 LPIGIGQLGKDTPINWTTKVERKKAGPTWTPTAKMHAEYRAAGEPLPAVVPAGPDNPMGL 182
           LPIGIG+LGKDTPINWTT V+RKKAGPTWTPTAKMHAEY A GE L  V PAGPDNPMGL
Sbjct: 121 LPIGIGELGKDTPINWTTSVQRKKAGPTWTPTAKMHAEYAARGETLQKVFPAGPDNPMGL 180

Query: 183 YALYIGRLYAIHGTNANFGIGLRVSHGCVRLRNDDIKFLFENVPVGTRVQFIDEPVKATT 242
           YALYIG LYAIHGTNANFGIGLRVSHGCVRLR DDIK+LF NVPVGTRVQFI+EPVKAT 
Sbjct: 181 YALYIGNLYAIHGTNANFGIGLRVSHGCVRLRADDIKYLFNNVPVGTRVQFINEPVKATV 240

Query: 243 EPDGSRYIEVHNPLSTTEAQFEGKEAVPITLNKSILAVTNEPDVDQTVVQQAVQDRSGMP 302
           EPDGSRY+EVHNPLS T  +F      PI++   +  V  +  V+ + V QA+Q RSGMP
Sbjct: 241 EPDGSRYVEVHNPLSRTVEEFHSDSPAPISMTPKVSKVLADASVNTSEVDQAIQRRSGMP 300

Query: 303 VRLN 306
            ++N
Sbjct: 301 TKIN 304