Pairwise Alignments

Query, 306 a.a., L,D-transpeptidase YbiS from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 340 a.a., L,D-transpeptidase family protein from Pectobacterium carotovorum WPP14

 Score =  317 bits (813), Expect = 2e-91
 Identities = 162/301 (53%), Positives = 204/301 (67%), Gaps = 8/301 (2%)

Query: 7   TLFAAAFAVVGFCKTASAVTYPLPTDGSRLIGQNQVITVPEGNTQPLEYFAAEYQMGLSN 66
           TL   AFA       A A  YPLP   SRLIG+N   TVP    + LE  AA++++GL  
Sbjct: 6   TLLGMAFAAYLASTAAKATEYPLPPPNSRLIGENIAYTVPNDG-RSLEAIAADFKIGLLG 64

Query: 67  MLEANPGVDTFLPKGGTVLNIPQQLILPDTVHEGIIINSAEMRLYYYPKGTNTVIVLPIG 126
           M+EANPGVD +LP  G+ + IP Q++LPDT  EGI++N AE+RLYYYPKG NTVIV PIG
Sbjct: 65  MMEANPGVDPYLPTAGSTITIPTQMLLPDTPREGIVVNLAELRLYYYPKGKNTVIVYPIG 124

Query: 127 IGQLGKDTPINWTTKVERKKAGPTWTPTAKMHAEY-RAAGEPLPAVVPAGPDNPMGLYAL 185
           IGQLG++TP+  TT V  K+  PTWTPTA +   Y    G  LPAVVPAGPDNPMGL+AL
Sbjct: 125 IGQLGRNTPL-MTTSVSEKRENPTWTPTANIRKHYLEEQGIKLPAVVPAGPDNPMGLHAL 183

Query: 186 YI---GRLYAIHGTNANFGIGLRVSHGCVRLRNDDIKFLFENVPVGTRVQFIDEPVKATT 242
            +   G +Y +HGTNA+FGIG+RVS GC+RLR DDIK LF+NVPVGTRVQ +++ +K + 
Sbjct: 184 RLSAHGGVYLLHGTNADFGIGMRVSSGCIRLRPDDIKALFDNVPVGTRVQIVNDAIKTSV 243

Query: 243 EPDGSRYIEVHNPLSTTEAQFEGKEAVPITLNKSILAVTNEPDVDQTVVQQAVQDRSGMP 302
           EPDG RY+EVH PLS T+   +  + +PI L         + + D   V  A+  RSGMP
Sbjct: 244 EPDGKRYVEVHQPLSKTDK--DDPQTMPIPLTAKTQKFVKDAETDSKAVADAIVRRSGMP 301

Query: 303 V 303
           +
Sbjct: 302 I 302