Pairwise Alignments

Query, 306 a.a., L,D-transpeptidase YbiS from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 311 a.a., L,D-transpeptidase from Escherichia coli ECRC98

 Score =  401 bits (1031), Expect = e-117
 Identities = 193/295 (65%), Positives = 229/295 (77%)

Query: 12  AFAVVGFCKTASAVTYPLPTDGSRLIGQNQVITVPEGNTQPLEYFAAEYQMGLSNMLEAN 71
           +FA++    T+ AVTYPLP +GSRL+GQ+  +TVP+ NTQPLE FAA+Y  GLSNMLEAN
Sbjct: 10  SFALLFASHTSLAVTYPLPPEGSRLVGQSLTVTVPDHNTQPLETFAAQYGQGLSNMLEAN 69

Query: 72  PGVDTFLPKGGTVLNIPQQLILPDTVHEGIIINSAEMRLYYYPKGTNTVIVLPIGIGQLG 131
           PG D FLPK G+ L IPQQLILP TV +GI++N AEMRLYYYP  +NTV V PIGIGQ G
Sbjct: 70  PGADVFLPKSGSQLTIPQQLILPVTVRKGIVVNVAEMRLYYYPPDSNTVEVFPIGIGQAG 129

Query: 132 KDTPINWTTKVERKKAGPTWTPTAKMHAEYRAAGEPLPAVVPAGPDNPMGLYALYIGRLY 191
           ++TP NW T VERK+  PTWTPT     EY   GE LPA VPAGPDNPMGLYA+YIGRLY
Sbjct: 130 RETPRNWVTTVERKQEAPTWTPTPNTRREYAKRGESLPAFVPAGPDNPMGLYAIYIGRLY 189

Query: 192 AIHGTNANFGIGLRVSHGCVRLRNDDIKFLFENVPVGTRVQFIDEPVKATTEPDGSRYIE 251
           AIHGTNANFGIGLRVS GC+RLRNDDIK+LF+NVPVGTRVQ ID+PVK TTEPDGS+++E
Sbjct: 190 AIHGTNANFGIGLRVSQGCIRLRNDDIKYLFDNVPVGTRVQIIDQPVKYTTEPDGSKWLE 249

Query: 252 VHNPLSTTEAQFEGKEAVPITLNKSILAVTNEPDVDQTVVQQAVQDRSGMPVRLN 306
           VH PLS   A++E    VP+ +  S+ A  N  +VD      A+Q RSGMPV+++
Sbjct: 250 VHEPLSRNRAEYESDRKVPLPVTPSLRAFINGQEVDVNRANAALQRRSGMPVQIS 304