Pairwise Alignments

Query, 306 a.a., L,D-transpeptidase YbiS from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 319 a.a., L,D-transpeptidase LdtC from Escherichia coli ECOR27

 Score =  290 bits (743), Expect = 2e-83
 Identities = 155/301 (51%), Positives = 200/301 (66%), Gaps = 8/301 (2%)

Query: 7   TLFAAAFAVVGFCKTASAVTYPLPTDGSRLIGQNQVITVPEGNTQPLEYFAAEYQMGLSN 66
           T F  A A V     A A T+PLP  GSRL+G+N+   V E +   LE  A +Y +G   
Sbjct: 11  TFFTFA-AAVALALPAKANTWPLPPAGSRLVGENKFHVV-ENDGGSLEAIAKKYNVGFLA 68

Query: 67  MLEANPGVDTFLPKGGTVLNIPQQLILPDTVHEGIIINSAEMRLYYYPKGTNTVIVLPIG 126
           +L+ANPGVD ++P+ G+VL IP Q +LPD   EGI+IN AE+RLYYYP G N+V V PIG
Sbjct: 69  LLQANPGVDPYVPRAGSVLTIPLQTLLPDAPREGIVINIAELRLYYYPPGKNSVTVYPIG 128

Query: 127 IGQLGKDT-PINWTTKVERKKAGPTWTPTAKMHAEYRAAGEPLPAVVPAGPDNPMGLYAL 185
           IGQLG DT      T V  K+A PTWTPTA + A Y+A G  LPAVVPAGPDNPMG +A+
Sbjct: 129 IGQLGGDTLTPTMVTTVSDKRANPTWTPTANIRARYKAQGIELPAVVPAGPDNPMGHHAI 188

Query: 186 YI---GRLYAIHGTNANFGIGLRVSHGCVRLRNDDIKFLFENVPVGTRVQFIDEPVKATT 242
            +   G +Y +HGTNA+FGIG+RVS GC+RLR+DDIK LF  V  GT+V  I+ P+K + 
Sbjct: 189 RLAAYGGVYLLHGTNADFGIGMRVSSGCIRLRDDDIKTLFSQVTPGTKVNIINTPIKVSA 248

Query: 243 EPDGSRYIEVHNPLSTTEAQFEGKEAVPITLNKSILAVTNEPDVDQTVVQQAVQDRSGMP 302
           EP+G+R +EVH PLS  E   +  + +PITLN ++ +  +    D  V+Q  +  RSGMP
Sbjct: 249 EPNGARLVEVHQPLS--EKIDDDPQLLPITLNSAMQSFKDAAQTDAEVMQHVMDVRSGMP 306

Query: 303 V 303
           V
Sbjct: 307 V 307