Pairwise Alignments

Query, 306 a.a., L,D-transpeptidase YbiS from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 334 a.a., L,D-transpeptidase LdtE from Escherichia coli ECOR27

 Score =  248 bits (632), Expect = 2e-70
 Identities = 142/305 (46%), Positives = 184/305 (60%), Gaps = 11/305 (3%)

Query: 5   LTTLFAAAFAVVGFCKTASAVTYPLPTDGSRLIGQNQVITVPEGNTQPLEYFAAEYQMGL 64
           LT     AF+ +   + A AV YPLP  GSRL+GQNQ  TV EG+   L+  A  +    
Sbjct: 7   LTLTLIGAFSAI---QAAWAVDYPLPPTGSRLVGQNQTYTVQEGDKN-LQSIARRFDTAA 62

Query: 65  SNMLEANPGVDTFLPKGGTVLNIPQQLILPDTVHEGIIINSAEMRLYYYPKGTNTVIVLP 124
             +LEAN  +   +PK GT + IP QL+LPD   +GII+N AE+RLYYYP G N V V P
Sbjct: 63  MLILEANNTIAP-VPKPGTTITIPSQLLLPDAPRQGIIVNLAELRLYYYPPGENIVQVYP 121

Query: 125 IGIGQLGKDTPINWTTKVERKKAGPTWTPTAKMHAEYRAAGEPLPAVVPAGPDNPMGLYA 184
           IGIG  G +TP+   T+V +K   PTWTPTA +       G  LP VVPAGP+NP+G YA
Sbjct: 122 IGIGLQGLETPV-METRVGQKIPNPTWTPTAGIRQRSLERGIKLPPVVPAGPNNPLGRYA 180

Query: 185 LYIGR---LYAIHGTNANFGIGLRVSHGCVRLRNDDIKFLFENVPVGTRVQFIDEPVKAT 241
           L +      Y IHGT+A   +GLRVS GC+R+   DIK LF +V  GT V+ I+EPVK +
Sbjct: 181 LRLAHGNGEYLIHGTSAPDSVGLRVSSGCIRMNAPDIKALFSSVRTGTPVKVINEPVKYS 240

Query: 242 TEPDGSRYIEVHNPLSTTEAQFEGKEAVPITLNKSILAVTNEPDVDQTVVQQAVQDRSGM 301
            EP+G RY+EVH PLS  E Q    + +P TL        +   VDQ +V +A+  R+G 
Sbjct: 241 VEPNGMRYVEVHRPLSAEEQQ--NVQTMPYTLPAGFTQFKDNKAVDQKLVDKALYRRAGY 298

Query: 302 PVRLN 306
           PV ++
Sbjct: 299 PVSVS 303