Pairwise Alignments

Query, 306 a.a., L,D-transpeptidase YbiS from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 329 a.a., L,D-transpeptidase family protein from Dickeya dianthicola ME23

 Score =  320 bits (820), Expect = 3e-92
 Identities = 164/302 (54%), Positives = 209/302 (69%), Gaps = 10/302 (3%)

Query: 8   LFAAAFAVVGFCKTASAVTYPLPTDGSRLIGQNQVITVPEGNTQPLEYFAAEYQMGLSNM 67
           LF +  A +   + ASA  YPLP   SRLIG+N   TVP     PLE  AA++++GL  M
Sbjct: 11  LFTSCLAGI---QPASATEYPLPPPDSRLIGENISYTVPNDG-HPLEVIAAKFKIGLLGM 66

Query: 68  LEANPGVDTFLPKGGTVLNIPQQLILPDTVHEGIIINSAEMRLYYYPKGTNTVIVLPIGI 127
           LEANPG D +LPK G+ L IP Q++LPDT  EG+++N AE+RLYY+PKG NTVIV PIGI
Sbjct: 67  LEANPGTDPYLPKPGSSLTIPLQMLLPDTPREGVVVNLAELRLYYFPKGKNTVIVYPIGI 126

Query: 128 GQLGKDTPINWTTKVERKKAGPTWTPTAKMHAEYRAAGEPLPAVVPAGPDNPMGLYALYI 187
           GQLG++TP+  T  +ER +  PTW PTA +   Y+  G  LPAVVP GPDNPMGL+AL +
Sbjct: 127 GQLGRNTPVMVTRVIER-RPNPTWIPTANIRRHYKEQGVTLPAVVPGGPDNPMGLFALRL 185

Query: 188 ---GRLYAIHGTNANFGIGLRVSHGCVRLRNDDIKFLFENVPVGTRVQFIDEPVKATTEP 244
              G +Y+IHGTNA+FGIG+RVS GC+RLR +DI+ LF +VPVGTRVQ I+EPVK   EP
Sbjct: 186 EKSGGVYSIHGTNADFGIGMRVSSGCIRLRPEDIEALFNDVPVGTRVQIINEPVKIALEP 245

Query: 245 DGSRYIEVHNPLSTTEAQFEGKEAVPITLNKSILAVTNEPDVDQTVVQQAVQDRSGMPVR 304
           DG RY+E H PLS T+   +  + +PI L++ + A     D D    Q A+  RSGMPV 
Sbjct: 246 DGKRYVEAHQPLSRTDK--DDPQTMPIALSQKVKAFIKHDDTDAEAAQNAIVRRSGMPVL 303

Query: 305 LN 306
           +N
Sbjct: 304 VN 305