Pairwise Alignments

Query, 454 a.a., ATP-dependent RNA helicase RhlE from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 449 a.a., ATP-dependent RNA helicase from Pseudomonas sp. S08-1

 Score =  431 bits (1108), Expect = e-125
 Identities = 241/460 (52%), Positives = 307/460 (66%), Gaps = 29/460 (6%)

Query: 1   MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL 60
           MSF+ LGL   +LR +    Y EPTP+Q+QAIPAVL+GRD++A+AQTGTGKTAGF LPLL
Sbjct: 1   MSFEPLGLIEPLLRTLKALDYSEPTPVQKQAIPAVLKGRDVLAAAQTGTGKTAGFALPLL 60

Query: 61  QHLITHQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM 120
           Q L T +        VRAL+L PTRELA Q+ + V+ Y++ L +R+  V+GGVSINPQMM
Sbjct: 61  QKL-TMEGSQVAANSVRALVLVPTRELAEQVAQAVQQYAQNLPLRTYSVYGGVSINPQMM 119

Query: 121 KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAK 180
           KLR G+D+LVATPGRLLDL  QNAV+ DQ++ LVLDEADRMLD+GF  ++  + + LP K
Sbjct: 120 KLRKGIDLLVATPGRLLDLYRQNAVRFDQLQALVLDEADRMLDLGFAKELDELFSALPRK 179

Query: 181 RQNLLFSATFSDDIKALAEKLLRNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMI 240
           RQ LLFSATFSD I+ +A++LLR+PL IEV+ RN A++ V Q +  VDKKRK ELL  + 
Sbjct: 180 RQTLLFSATFSDAIRLMAKELLRDPLSIEVSPRNAAAKSVKQWLVTVDKKRKSELLLHLY 239

Query: 241 GQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLV 300
            +  W Q+LVF +T+ G + L + L  +GI + +IHG+K Q +R RAL  FK+G++RVL 
Sbjct: 240 REHGWDQLLVFAKTRKGVDELEQLLLAEGIAADSIHGDKPQPSRLRALQRFKAGEVRVLA 299

Query: 301 ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDI 360
           ATD+AARGLDI ELP VVN +LP V EDYVHRIGRTGRA ATGEA+SLVC DE +LL  I
Sbjct: 300 ATDVAARGLDISELPRVVNLDLPIVAEDYVHRIGRTGRAGATGEAVSLVCADEVELLAAI 359

Query: 361 EKLLKKEIPRITTPGYEPD------------------PSIKAEPIQNGRQQRGGGGGRGR 402
           E L+ + I R   PG+EPD                  P +K  P        G G   G+
Sbjct: 360 ETLIGQIIRREDEPGFEPDHRVPQTAPGGAVLKKPKKPKVKVIP--------GAGARAGK 411

Query: 403 GQNQGGAGRSQQPRRQDSGAAKAKPKPRTGEGKTAGDKAR 442
           G+   G        +  + A +A PK   GE    G K R
Sbjct: 412 GKIHMGNWFEADDDKPKAKAVRAVPK--FGEKPKPGPKKR 449