Pairwise Alignments

Query, 316 a.a., Virulence factor VirK from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 309 a.a., virulence protein from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  172 bits (435), Expect = 1e-47
 Identities = 101/281 (35%), Positives = 151/281 (53%), Gaps = 8/281 (2%)

Query: 33  KFWRKASFRRKFLIRSLVMPRATSQLLTNLTQWPELNTLLARQPRLPIRLHRPYMAVNIK 92
           K W +  FR KFL+R L+ P  T +    L    +  TL+  +P LP ++ RPY+   + 
Sbjct: 29  KRWGERKFRYKFLLRCLINPVTTIKYFNELCHLSQPRTLIIHRPLLPAKIQRPYLYTGLS 88

Query: 93  RDFALDALCFHYQQMRQLLSREQQVSYLSQYGLNLAKFETKTGELFQLDLVSLVSLDKEG 152
                 A+  HYQ ++     + +   LS+  + LA  E K G L  +        D+EG
Sbjct: 89  IRCRAKAILEHYQFVQSFPESKIKKILLSEEQILLAHLEGKNGALVDI-YCGPCGYDREG 147

Query: 153 ESTIVV--RDAQLRILAEITFTLCRFNQQRTLFIGGLQGAANDVPHEIIQQATKACHGLF 210
           E T+ +   D  L   A ++F+  R   ++   + GLQG +  +  ++I+ ATK C+GLF
Sbjct: 148 ELTLTLCFNDTPL---ARLSFSFIRHEGKQIALVAGLQGPSKHIGPQVIRNATKDCYGLF 204

Query: 211 PKRIVMEALCQFAQVFQAEKIIAVSNDAHVYRSWRYM-DKKTQMHADYDAFWESLGGERI 269
           PKR++ EA     Q    ++I AVS + HVYR  RY+  KK    A Y  FWESL G + 
Sbjct: 205 PKRMLYEAFATLMQACNVDEIYAVSENNHVYRQLRYLFQKKKTFVASYSEFWESLNGVK- 263

Query: 270 KGNYYTLPLAIARKSEAEIASKKRAEYRRRYALLDSVVEQV 310
           KG  Y LP  + RK+   I SKKRAEYR+RY +LD+++++V
Sbjct: 264 KGALYHLPSQVMRKAPESIPSKKRAEYRKRYHILDTIIQEV 304