Pairwise Alignments

Query, 573 a.a., Transport ATP-binding protein CydC from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 582 a.a., Lipid A export ATP-binding/permease protein MsbA (EC 3.6.3.25) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  205 bits (522), Expect = 4e-57
 Identities = 146/518 (28%), Positives = 264/518 (50%), Gaps = 29/518 (5%)

Query: 66  VRGAAITRTAGRYFERLVSHDATFRVLQHLRIYTFSKLLPLSPASLARYQQGELLNRIVA 125
           V G  I R    Y         + +V+  +R   F  ++ +  A   +   G LL+RI  
Sbjct: 71  VIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITY 130

Query: 126 DVDTLDH-------LYLRVISPLVGAFVVIMIVTLGLSVLDVTLAITLGGIMLLTLFIMP 178
           D + +           +R  + ++G F+++   +  LS++ V LA     I+ + + ++ 
Sbjct: 131 DSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLA----PIVSIAIRVVS 186

Query: 179 PVFYRAGKNTGQNLTHLRGQYRQQLTSWLQGQAELTIFGASKRYRAQMEATELQWHEAQR 238
             F    ++  +N+ +  GQ        L+G  E+ IFG  +    + +    +      
Sbjct: 187 KRF----RSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGM 242

Query: 239 RQSELTALSQALMLLIGALAVMLMLWMAS-GGVGGNTQPGALIALF--VFCALAAFEALA 295
           +    +++S  ++ LI +LA+  +L+ AS   V  +   G +  +F  +   +   ++L 
Sbjct: 243 KMVSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLT 302

Query: 296 PVTGAFQHLGQVIASALRITELTEQKPEVTFPQAETPAPEKVT--LTLRDVSFRYPDQPI 353
            V   FQ       +   I +  ++K E           ++ T  L  R+V+F YP + +
Sbjct: 303 NVNAQFQRGMAACQTLFAILDSEQEKDE------GKRVIDRATGDLEFRNVTFTYPGREV 356

Query: 354 NALNALSLQANPGEHVAILGRTGCGKSTLLQLLTRAWDPQQGEILLNDLPLSSLSESALR 413
            AL  ++L+   G+ VA++GR+G GKST+  L+TR +D  +G IL++   L   + ++LR
Sbjct: 357 PALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLR 416

Query: 414 RTISVVPQRVHLFSATLRDNLLLAAPNA-SDEALSDMLRRVGLENLLE--DSGLNSWLGE 470
             +++V Q VHLF+ T+ +N+  A     S E + +  R     + +   D+GL++ +GE
Sbjct: 417 NQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGE 476

Query: 471 GGRLLSGGELRRLAIARALLHDAPLMLLDEPTEGLDATTESEMLELLADVMREKTVLMVT 530
            G LLSGG+ +R+AIARALL D+P+++LDE T  LD  +E  +   L ++ + +T L++ 
Sbjct: 477 NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIA 536

Query: 531 HRLRGLARFDQIIVMDDGHIIERGTHAELLAGQGRYYQ 568
           HRL  + + D+I+V++DG I+ERGTH+ELLA  G Y Q
Sbjct: 537 HRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQ 574