Pairwise Alignments

Query, 685 a.a., Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 697 a.a., type III secretion protein HrpI from Pseudomonas simiae WCS417

 Score =  434 bits (1117), Expect = e-126
 Identities = 263/696 (37%), Positives = 417/696 (59%), Gaps = 34/696 (4%)

Query: 3   LSLLNSARL----RPELLILVLMVMIISMFVIPLPTYLVDFLIALNIVLAILVFMGSFYI 58
           LS +NS  L    R E+L  V+++ I+ +F++PLPT+LVD LIALNI ++ L+ + + Y+
Sbjct: 4   LSAINSFLLKVAQRAEVLGAVVVMAIVFIFIVPLPTWLVDILIALNICISCLLIVLALYL 63

Query: 59  DRILSFSTFPAVLLITTLFRLALSISTSRLILIEADAGEIIATFGQFVIGDSLAVGFVVF 118
              L+FS+FP++LL+TT+FRLALSI+T+RLIL+E DAG I+  FG FV+G +LAVG V+F
Sbjct: 64  PGPLAFSSFPSILLLTTMFRLALSIATTRLILLEQDAGHIVEAFGNFVVGGNLAVGMVIF 123

Query: 119 SIVTVVQFIVITKGSERVAEVAARFSLDGMPGKQMSIDADLKAGIIDADAARERRSVLER 178
            I+T+V F+VITKGSERVAEVAARFSLD MPGKQMSID+DL+AG+ID   AR++R  L R
Sbjct: 124 LILTLVNFLVITKGSERVAEVAARFSLDAMPGKQMSIDSDLRAGLIDGMQARDKREQLSR 183

Query: 179 ESQLYGSFDGAMKFIKGDAIAGIIIIFVNFIGGISVGMTRHGMDLSSALSTYTMLTIGDG 238
           ESQL+G+ DGAMKF+KGDAIAG+II+ VN +GG S GM +HG+  S ++S Y++LTIGDG
Sbjct: 184 ESQLFGAMDGAMKFVKGDAIAGLIIVVVNLLGGFSTGMFQHGLSASESISLYSVLTIGDG 243

Query: 239 LVAQIPALLIAISAGFIVTRVNGD----SDNMGRNIMTQLLNNPFVLVVTAILTISMGTL 294
           L+AQIPALLI+++AG I+TRV  D    + NMG  I  Q+ + P   ++ ++  ++   +
Sbjct: 244 LIAQIPALLISLTAGMIITRVAPDGRRGASNMGAEIARQMTSEPKSWMIASVGMLAFAVV 303

Query: 295 PGFPLPVFVILSVVLSVLFYFKFREAKRSAAKPKTSKGEQPLSIEEKEGSSLGLIGDLDK 354
           PG P  VF+++++V   L Y+  R+ +R   +P     E   ++  +E  S  L G    
Sbjct: 304 PGMPTGVFILIALVTGSLGYYLMRQRQRQ-EQPAAETAE---AVRPEENGSEDLRG---- 355

Query: 355 VSTETVPLILLVPKSRREDLEKAQLAERL---RSQFFIDYGVRLPEVLLRDGEGLDDNSI 411
               + P +L      R   E A L   +   R+    + G+ LP   +   + L D+ +
Sbjct: 356 -FDPSRPYLLQFSPVIRGTPEVADLVHSIRQARNALVANIGLTLPPFEVELDDSLADDEM 414

Query: 412 VLLINEIRVEQFTVYFDLMRVVNYSDEVVSFGINPT-----IHQQGSSQYFWVTHEEGEK 466
              ++E+ + + +V      V + + E  +  + P      + ++    + W+  ++   
Sbjct: 415 RFCVHEVPMVKASV------VSHVAVERKALSVEPAHAIAGLVERDEQDWLWLAPDD-PL 467

Query: 467 LRELGYVLRNALDELYHCLAVTLARNVNEYFGIQETKHMLDQLEAKFPDLLKEVLRHATV 526
           L +       A   +   +   +  +  ++ GIQE+K +L  LE   P+L++E+ R   +
Sbjct: 468 LDDPQLERFTAASLIVERMKQAMMLSGPQFLGIQESKSILSWLEHNQPELVQELQRIMPL 527

Query: 527 QRISEVLQRLLSERVSVRNMKLIMEALALWAPREKDVINLVEHIRGAMARYICHKFANGG 586
            R S VLQRL SE V +R ++LI+E+L  +   E++   L ++ R A+   I H+++   
Sbjct: 528 SRFSAVLQRLASEGVPLRAVRLIVESLIEYGQHEREPDALADYARIALKAQIYHQYSEAD 587

Query: 587 ELRAVMVSAEVEDVIRKGIRQTSGSTFLSLDPEASANLMDLITLKLDDLLIAHKDLVLLT 646
            L A ++S + E+++R+ +RQT    F +LD E SA L+ L+       +      V+L 
Sbjct: 588 GLHAWLLSPQTENILREALRQTQTGVFFALDDEHSAVLVSLLNQAFP--VRPKLKSVMLV 645

Query: 647 SVDVRRFIKKMIEGRFPDLEVLSFGEIADSKSVNVI 682
           + D+R  ++ ++   F  + VLSF E+  +  V V+
Sbjct: 646 AQDLRSPLRTLLLEEFNHVPVLSFAELGSASKVKVL 681