Pairwise Alignments

Query, 685 a.a., Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 681 a.a., Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  451 bits (1159), Expect = e-131
 Identities = 259/677 (38%), Positives = 412/677 (60%), Gaps = 31/677 (4%)

Query: 12  RPELLILVLMVMIISMFVIPLPTYLVDFLIALNIVLAILVFMGSFYIDRILSFSTFPAVL 71
           R ++++  ++++ I M ++PLPT++VD LI +N++ ++++ + + Y+   L  S FP++L
Sbjct: 21  RQDMVLATVLLIAIVMMLLPLPTWMVDILITINLMFSVILLLIAIYLSDPLDLSVFPSLL 80

Query: 72  LITTLFRLALSISTSRLILIEADAGEIIATFGQFVIGDSLAVGFVVFSIVTVVQFIVITK 131
           LITTL+RL+L+ISTSRL+L++ +AG I+  FG+FV+G +L VG VVF+I+T+VQFIVITK
Sbjct: 81  LITTLYRLSLTISTSRLVLLQHNAGNIVDAFGKFVVGGNLTVGLVVFTIITIVQFIVITK 140

Query: 132 GSERVAEVAARFSLDGMPGKQMSIDADLKAGIIDADAARERRSVLERESQLYGSFDGAMK 191
           G ERVAEV+ARFSLDGMPGKQMSID DL+AG+IDAD AR  R  +++ES+  G+ DGAMK
Sbjct: 141 GIERVAEVSARFSLDGMPGKQMSIDGDLRAGVIDADHARTLRQHVQQESRFLGAMDGAMK 200

Query: 192 FIKGDAIAGIIIIFVNFIGGISVGMTRHGMDLSSALSTYTMLTIGDGLVAQIPALLIAIS 251
           F+KGD IAGII++ VN IGGI + + ++ M +S A+ TY++L+IGDGL  QIP+LLI++S
Sbjct: 201 FVKGDTIAGIIVVLVNIIGGIIIAIVQYDMSMSEAVHTYSVLSIGDGLCGQIPSLLISLS 260

Query: 252 AGFIVTRVNGDS-DNMGRNIMTQLLNNPFVLVVTAILTISMGTLPGFPLPVFVILSVVLS 310
           AG IVTRV G+   N+   + +Q+   P  L++TA++ + +  +PGFP       S +L+
Sbjct: 261 AGIIVTRVPGEKRQNLATELSSQIARQPQSLILTAVVLMLLALIPGFPFITLAFFSALLA 320

Query: 311 VLFYFKFREAKRSAAKPKTSKGEQPLSIEEKEGSSLGLIGDLDKVSTETVPLIL-LVPKS 369
           +         +R  +    +  E P               + D +     PLIL L P  
Sbjct: 321 LPIIL----IRRKKSVVSANGVEAP---------------EKDSMVPGACPLILRLSPTL 361

Query: 370 RREDLEKAQLAERLRSQFFIDYGVRLPEVLLRDGEGLDDNSIVLLINEIRVEQFTVYFDL 429
              DL +    + +R   F D GV LPEV +       +   VLL  E  V   ++    
Sbjct: 362 HSADLIRD--IDAMRWFLFEDTGVPLPEVNIEVLPEPTEKLTVLLYQE-PVFSLSIPAQA 418

Query: 430 MRVVNYSDEVVSFGINPTIHQQGSSQYFWVTHEEGEKLRELGYVLRNALDELYHCLAVTL 489
             ++  +D  V  G + T+   G  Q  W+T +   K +  G  +      +   L   L
Sbjct: 419 DYLLIGADASV-VGDSQTL-PNGMGQICWLTKDMAHKAQGFGLDVFAGSQRISALLKCVL 476

Query: 490 ARNVNEYFGIQETKHMLDQLEAKFPDLLKEVLRHATVQRISEVLQRLLSERVSVRNMKLI 549
            R++ E+ G+QET+++++ +E  + +L+KE+ R   + +I+E LQRL+SERVS+R+++LI
Sbjct: 477 LRHMGEFIGVQETRYLMNAMEKNYSELVKELQRQLPINKIAETLQRLVSERVSIRDLRLI 536

Query: 550 MEALALWAPREKDVINLVEHIRGAMARYICHKF-ANGGELRAVMVSAEVEDVIRKGIRQT 608
              L  WAPREKDV+ L E++R A+ R+I  +    G  L  + +   +E+++R+ IRQT
Sbjct: 537 FGTLIDWAPREKDVLMLTEYVRIALRRHILRRLNPEGKPLPILRIGEGIENLVRESIRQT 596

Query: 609 SGSTFLSLDPEASANLMDLITLKLDDLLIAHKDLVLLTSVDVRRFIKKMIEGRFPDLEVL 668
           +  T+ +L       ++ LI    +  L     L ++TSVD RRF++K+ E    D+ +L
Sbjct: 597 AMGTYTALSSRHKTQILQLI----EQALKQSAKLFIVTSVDTRRFLRKITEATLFDVPIL 652

Query: 669 SFGEIADSKSVNVIKTI 685
           S+ E+ +   + V+++I
Sbjct: 653 SWQELGEESLIQVVESI 669