Pairwise Alignments

Query, 685 a.a., Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 692 a.a., Flagellar biosynthesis protein FlhA from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  379 bits (973), Expect = e-109
 Identities = 229/675 (33%), Positives = 383/675 (56%), Gaps = 19/675 (2%)

Query: 19  VLMVMIISMFVIPLPTYLVDFLIALNIVLAILVFMGSFYIDRILSFSTFPAVLLITTLFR 78
           +L+++I+SM V+PLP +++D L   NI L+I+V + + +  R L F+ FP +LL TTL R
Sbjct: 26  ILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLDFAAFPTILLFTTLLR 85

Query: 79  LALSISTSRLILIE-----ADAGEIIATFGQFVIGDSLAVGFVVFSIVTVVQFIVITKGS 133
           LAL+++++R+IL+E     A AG+++  FG F++G + A+G VVF I+ ++ F+VITKG+
Sbjct: 86  LALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFIILVIINFMVITKGA 145

Query: 134 ERVAEVAARFSLDGMPGKQMSIDADLKAGIIDADAARERRSVLERESQLYGSFDGAMKFI 193
            R+AEV ARF LDGMPGKQM+IDADL AG+I  D A++RRS + +E+  YGS DGA KF+
Sbjct: 146 GRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFV 205

Query: 194 KGDAIAGIIIIFVNFIGGISVGMTRHGMDLSSALSTYTMLTIGDGLVAQIPALLIAISAG 253
           +GDAIAGI+I+ +N +GG+ VG+ +HGM + SA  +YT+LTIGDGLVAQIPAL+I+ +AG
Sbjct: 206 RGDAIAGILIMVINVVGGLLVGVLQHGMSIGSAAESYTLLTIGDGLVAQIPALVISTAAG 265

Query: 254 FIVTRVNGDSDNMGRNIMTQLLNNPFVLVVTAILTISMGTLPGFPLPVFVILSVVLSVLF 313
            IVTRV+ D D +G  ++ QL +NP V+++ A +   +G +PG P  VF++ +  L  L 
Sbjct: 266 VIVTRVSTDQD-VGEQMVGQLFSNPRVMLLAAAVLGLLGMVPGMPNLVFLLFTAALLGLA 324

Query: 314 YFKFREAKRSAAKPKTSKGEQPLSIEEKEGSSLGLIGDLD-KVSTETVPLILLVPKSRRE 372
           ++     +++  +P+  K  +  S+ E   + + L   L  +V    +P++       ++
Sbjct: 325 WWLRGREEKAPEEPQPVKMPENNSVVEATWNDVQLEDSLGMEVGYRLIPMV-----DFQQ 379

Query: 373 DLEKAQLAERLRSQFFIDYGVRLPEVLLRDGEGLDDNSIVLLINEIRVEQFTVYFDLMRV 432
           D E       +R +F  D G   P V +RD   L      +L+  + +     Y      
Sbjct: 380 DGELLGRIRSIRKKFAQDMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWLA 439

Query: 433 VNYSDEVVSFGINPTIHQQGSSQYFWVTHEEGEKLRELGYVLRNALDELYHCLAVTLARN 492
           +N      +     T+         W+     E+ +  G+ +  A   +   L   + + 
Sbjct: 440 INPGTAAGTLPGEKTVDPAFGLDAIWIESALKEQAQIQGFTVVEASTVVATHLNHLIGQF 499

Query: 493 VNEYFGIQETKHMLDQLEAKFPDLLKEVLRH-ATVQRISEVLQRLLSERVSVRNMKLIME 551
             E FG QE + +LD++  + P L ++++    T+  + +VLQ LL+E+V +R+M+ I+E
Sbjct: 500 SAELFGRQEAQQLLDRVSQEMPKLTEDLVPGVVTLTTLHKVLQNLLAEKVPIRDMRTILE 559

Query: 552 ALALWAPREKDVINLVEHIRGAMARYICHK-FANGGELRAVMVSAEVEDVIRKGIRQTSG 610
            LA  AP + D   L   +R A+ R I  + F    E++ + +   +E ++ + ++   G
Sbjct: 560 TLAEHAPLQSDPHELTAVVRVALGRAITQQWFPGNEEVQVIGLDTALERLLLQALQGGGG 619

Query: 611 STFLSLDPEASANLMDLITLKLDDLLIAHKDLVLLTSVDVRRFIKKMIEGRFPDLEVLSF 670
                L+P  +  L+      L    +     VLL +  +R  + + +    P L VLS 
Sbjct: 620 -----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLSN 674

Query: 671 GEIADSKSVNVIKTI 685
            E++D++ + +  TI
Sbjct: 675 LELSDNRHIRMTATI 689