Pairwise Alignments

Query, 685 a.a., Type III secretion inner membrane channel protein (LcrD,HrcV,EscV,SsaV) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 692 a.a., flagellar biosynthesis protein A (NCBI) from Escherichia coli BW25113

 Score =  381 bits (979), Expect = e-110
 Identities = 231/676 (34%), Positives = 387/676 (57%), Gaps = 21/676 (3%)

Query: 19  VLMVMIISMFVIPLPTYLVDFLIALNIVLAILVFMGSFYIDRILSFSTFPAVLLITTLFR 78
           +L+++I+SM V+PLP +++D L   NI L+I+V + + +  R L F+ FP +LL TTL R
Sbjct: 26  ILILLILSMMVLPLPAFILDLLFTFNIALSIMVLLVAMFTQRTLEFAAFPTILLFTTLLR 85

Query: 79  LALSISTSRLILIE-----ADAGEIIATFGQFVIGDSLAVGFVVFSIVTVVQFIVITKGS 133
           LAL+++++R+IL+E     A AG+++  FG F++G + A+G VVF I+ ++ F+VITKG+
Sbjct: 86  LALNVASTRIILMEGHTGAAAAGKVVEAFGHFLVGGNFAIGIVVFVILVIINFMVITKGA 145

Query: 134 ERVAEVAARFSLDGMPGKQMSIDADLKAGIIDADAARERRSVLERESQLYGSFDGAMKFI 193
            R+AEV ARF LDGMPGKQM+IDADL AG+I  D A++RRS + +E+  YGS DGA KF+
Sbjct: 146 GRIAEVGARFVLDGMPGKQMAIDADLNAGLIGEDEAKKRRSEVTQEADFYGSMDGASKFV 205

Query: 194 KGDAIAGIIIIFVNFIGGISVGMTRHGMDLSSALSTYTMLTIGDGLVAQIPALLIAISAG 253
           +GDAIAGI+I+ +N +GG+ VG+ +HGM +  A  +YT+LTIGDGLVAQIPAL+I+ +AG
Sbjct: 206 RGDAIAGILIMVINIVGGLLVGVLQHGMSMGHAAESYTLLTIGDGLVAQIPALVISTAAG 265

Query: 254 FIVTRVNGDSDNMGRNIMTQLLNNPFVLVVTAILTISMGTLPGFPLPVFVILSV-VLSVL 312
            IVTRV+ D D +G  ++ QL +NP V++++A +   +G +PG P  VF++ +  +L + 
Sbjct: 266 VIVTRVSTDQD-VGEQMVNQLFSNPSVMLLSAAVLGLLGLVPGMPNLVFLLFTAGLLGLA 324

Query: 313 FYFKFREAKRSAAKPKTSKGEQPLSIEEKEGSSLGLIGDLD-KVSTETVPLILLVPKSRR 371
           ++ + RE K + A+PK  K  +  ++ E   + + L   L  +V    +P++       +
Sbjct: 325 WWIRGREQK-APAEPKPVKMAENNTVVEATWNDVQLEDSLGMEVGYRLIPMV-----DFQ 378

Query: 372 EDLEKAQLAERLRSQFFIDYGVRLPEVLLRDGEGLDDNSIVLLINEIRVEQFTVYFDLMR 431
           +D E       +R +F  + G   P V +RD   L      +L+  + +     Y     
Sbjct: 379 QDGELLGRIRSIRKKFAQEMGFLPPVVHIRDNMDLQPARYRILMKGVEIGSGDAYPGRWL 438

Query: 432 VVNYSDEVVSFGINPTIHQQGSSQYFWVTHEEGEKLRELGYVLRNALDELYHCLAVTLAR 491
            +N      +     T+         W+     E+ +  GY +  A   +   L   +++
Sbjct: 439 AINPGTAAGTLPGEATVDPAFGLNAIWIESALKEQAQIQGYTVVEASTVVATHLNHLISQ 498

Query: 492 NVNEYFGIQETKHMLDQLEAKFPDLLKEVLRH-ATVQRISEVLQRLLSERVSVRNMKLIM 550
           +  E FG QE + +LD++  + P L ++++    T+  + +VLQ LL E+V +R+M+ I+
Sbjct: 499 HAAELFGRQEAQQLLDRVAQEMPKLTEDLVPGVVTLTTLHKVLQNLLDEKVPIRDMRTIL 558

Query: 551 EALALWAPREKDVINLVEHIRGAMARYICHK-FANGGELRAVMVSAEVEDVIRKGIRQTS 609
           E LA  AP + D   L   +R A+ R I  + F    E+  + +   +E ++ + ++   
Sbjct: 559 ETLAEHAPIQSDPHELTAVVRVALGRAITQQWFPGKDEVHVIGLDTPLERLLLQALQGGG 618

Query: 610 GSTFLSLDPEASANLMDLITLKLDDLLIAHKDLVLLTSVDVRRFIKKMIEGRFPDLEVLS 669
           G     L+P  +  L+      L    +     VLL +  +R  + + +    P L VLS
Sbjct: 619 G-----LEPGLADRLLAQTQEALSRQEMLGAPPVLLVNHALRPLLSRFLRRSLPQLVVLS 673

Query: 670 FGEIADSKSVNVIKTI 685
             E++D++ + +  TI
Sbjct: 674 NLELSDNRHIRMTATI 689