Pairwise Alignments

Query, 553 a.a., Type III secretion transcriptional activator HilA from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 920 a.a., transcriptional regulator from Pseudomonas simiae WCS417

 Score = 54.7 bits (130), Expect = 2e-11
 Identities = 39/130 (30%), Positives = 69/130 (53%), Gaps = 9/130 (6%)

Query: 27  LLRSEKKVNIPPKEYAVLVILLEAAGEIVSKNTLLDQVWGDAEVNEESLTRCIYALRRIL 86
           +L + + + +  +   +L+ILLE AG +VSK  L+ +VW  + V + +L   + ALR+ L
Sbjct: 23  VLEAGRPLRLGRRAVEILLILLEQAGNVVSKQELIARVWPKSVVEDGNLRVHMAALRKAL 82

Query: 87  SEDKE-HRYIETLYGQGYRF-----NRPVVVVSPPAPQPTTHTLAILPFQMQDQVQSESL 140
            + +   RYI T+  +GY F       P+ + +  APQ T H    LP +    +  ++L
Sbjct: 83  GDGQAGQRYIVTVAQRGYSFVAPLSIEPMTLPTEGAPQGTCHN---LPLRRTRMLGRQAL 139

Query: 141 HYSIVKGLSQ 150
             S+V+ L +
Sbjct: 140 IDSLVQQLPE 149