Pairwise Alignments

Query, 553 a.a., Type III secretion transcriptional activator HilA from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 458 a.a., predictedtranscriptional regulator (NCBI) from Escherichia coli BW25113

 Score =  169 bits (429), Expect = 2e-46
 Identities = 118/403 (29%), Positives = 203/403 (50%), Gaps = 6/403 (1%)

Query: 21  LNMDGSLLRSEKKVNIPPKEYAVLVILLEAAGEIVSKNTLLDQVWGDAEVNEESLTRCIY 80
           L  DG L +  ++V IP KE  VL++LLE+AG +V K+ +++ VW +  V++ESLTRCIY
Sbjct: 17  LTEDGILTQGNEQVYIPQKELGVLIVLLESAGHVVLKDMIIESVWKNIIVSDESLTRCIY 76

Query: 81  ALRRILSEDKEHRYIETLYGQGYRFNRPVVVVSPPAPQPTTHTLAILPFQMQ-DQVQSES 139
           +LR I  +    R IET+Y +GYRF+  V          + +++AI PF    + +    
Sbjct: 77  SLRCIFEKIGYDRCIETIYRKGYRFSGQVFKTKINEDNTSDYSIAIFPFTTSLNTLDPLI 136

Query: 140 LHYSIVKGLSQYAPFGLSVLPVTITKNCRSVKDILELMDQLRPDYYISGQMIPDGNDNIV 199
           L+  +V+ +S     GL   P+  T  C         + + +PDY+++G++  +   N +
Sbjct: 137 LNQELVQIISNKKIDGLYTYPMAATNFCNDHISQNSFLSRFKPDYFVTGRINQNNAVNTL 196

Query: 200 QIEIVRVKGYHLLHQESIKLIE-HQPASLLQNKIANLLLRCIPGLRWDTKQISELNSIDS 258
            IE++  K   L+    + + E H  +  + + I   + +    +R   +     N   S
Sbjct: 197 YIELIDAKNLFLIASNHLPVDELHNTSQFIIDNILQTVHKPERSVRLAKQDQGYKNHYLS 256

Query: 259 TMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAP---YCALAECYLSMAQMGIFD 315
             + L GK EL  +TP S+ +A+ +  +  N S         YC LAEC++S+A  G  +
Sbjct: 257 DEM-LAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSE 315

Query: 316 KQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIK 375
            + A  KA E     +++   + + L ++GLI  +  +  V  +LF+QA + S   A + 
Sbjct: 316 LELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLY 375

Query: 376 YYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYY 418
           YY     F   ++EEA   I++ L+L+P R  A + K  +  Y
Sbjct: 376 YYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMY 418