Pairwise Alignments

Query, 348 a.a., Putative transport protein from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 342 a.a., membrane protein from Pseudomonas simiae WCS417

 Score = 80.1 bits (196), Expect = 8e-20
 Identities = 70/280 (25%), Positives = 119/280 (42%), Gaps = 5/280 (1%)

Query: 58  QAILGCMIAQNLTGSILTTLALYWPVVLLVLLVTLLSSAVVGWLLVRYSSLPGNTGAWGS 117
           Q ++G  I  + T  ++  +  ++ ++    LVT +SS V  WL+ R S     T  + S
Sbjct: 62  QWVVGIGIGLHFTPVVIEQVMSHFGLIFFGALVTSMSSVVGVWLM-RRSGEDRATAFFSS 120

Query: 118 SPGGAAAMVAMAQDYGADIRLVAFMQYLRVLFVAGAAVLVTRLILGDSAAAVSQQVIWFP 177
            PGG+  MV +    GA +  VA  Q LRVL V      + + +L           + +P
Sbjct: 121 MPGGSGEMVNLGARNGAVLSRVAAGQSLRVLVVVLCVPAIFKYLLEGGTPQFHPAPVSWP 180

Query: 178 PLSGNVLTTLLLAIVAGIAGRLMRIPSGTMLLPMLAGALLHSQGIIEIELPEWLLAVAYM 237
            L    L    +  +     + +R P+  +  P+L  A       + I LP+    +   
Sbjct: 181 WL----LALFPMGALVAWGWQRLRQPNPWLFGPLLVSATASVIWDLHIGLPDGGSQIGQW 236

Query: 238 AIGWRIGLGFDRQVFFMALRPLPQILLSIFALMAICAAMAWGMAYYMQIDFMTAYLATSP 297
            IG  +G  F+RQ F  A   + + L+     MA+    A G++    +D  +  L   P
Sbjct: 237 LIGSGLGCHFNRQFFRRAPSFMGRTLIGTALTMALATLAAVGLSALTHLDLRSLTLGMMP 296

Query: 298 GGLDTVAAIAAGSSADMALIMAMQTLRLFSILLTGPAVAR 337
           GG+  ++  A      + L+ AMQ +RL  +L     + R
Sbjct: 297 GGIAEMSLTAETLQLSVPLVTAMQVMRLLFVLFLAEPLFR 336



 Score = 38.1 bits (87), Expect = 3e-07
 Identities = 40/162 (24%), Positives = 66/162 (40%), Gaps = 17/162 (10%)

Query: 186 TLLLAIVAGIAGRLMRIPSGTMLLPMLAGALLHSQGIIEIE-LPEWLLA-------VAYM 237
           T L+ +  G    L+  P     LP + G+LL    II +  L  W LA           
Sbjct: 12  TPLVGLAGGYLASLVGWP-----LPYMVGSLL---AIILVRCLTPWQLAEIPGGRKCGQW 63

Query: 238 AIGWRIGLGFDRQVFFMALRPLPQILLSIFALMAICAAMAWGMAYYMQIDFMTAYLATSP 297
            +G  IGL F   V    +     I               W M    + D  TA+ ++ P
Sbjct: 64  VVGIGIGLHFTPVVIEQVMSHFGLIFFGALVTSMSSVVGVWLMRRSGE-DRATAFFSSMP 122

Query: 298 GGLDTVAAIAAGSSADMALIMAMQTLRLFSILLTGPAVARFI 339
           GG   +  + A + A ++ + A Q+LR+  ++L  PA+ +++
Sbjct: 123 GGSGEMVNLGARNGAVLSRVAAGQSLRVLVVVLCVPAIFKYL 164