Pairwise Alignments

Query, 326 a.a., Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 327 a.a., RluA family pseudouridine synthase from Magnetospirillum magneticum AMB-1

 Score =  197 bits (502), Expect = 2e-55
 Identities = 127/312 (40%), Positives = 173/312 (55%), Gaps = 11/312 (3%)

Query: 11  VSENQLGQRLDQALAEMFPDYSRSRIKEWILNQRVLVNGQLCDKPKEKVLGGERVAIDAE 70
           V   + G RLD+ LA   P+ SR+RIK  + + RV +          +V  G+   +D  
Sbjct: 14  VEPEEAGTRLDRWLALRLPELSRTRIKGLMEDGRVSLEETTISDASLRVKPGQCFVVDVP 73

Query: 71  IDEEIRFEAQDIPLDIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLHY----YPPI 126
            D   + E QDI L +VYED+D++VI+KP  +VVHP  GNPD T++NALL +       I
Sbjct: 74  PDAPAQPEPQDIALTVVYEDEDLIVIDKPAGMVVHPAPGNPDETLVNALLAHCGESLAGI 133

Query: 127 ADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQLREITREYEAVAIGHMT-AGGTV 185
             V R GIVHR+DKDT+GL+V AKT  A   L        + R Y A+  G  +   G +
Sbjct: 134 GGVKRPGIVHRIDKDTSGLLVAAKTDAAHRGLATQFAAHTLERAYWALVWGTPSPRQGEI 193

Query: 186 NEPISRHPTKRTHMS-VHPMGKPAVTHYRIMEHFR--VHTRLRLRLETGRTHQIRVHMAH 242
              I R+P  R  M+ V   GKPA+T YR+++ F     + +  RL TGRTHQIRVHM  
Sbjct: 194 EGNIGRNPNDRKKMAVVKSGGKPALTRYRVLKSFAGGAVSLVECRLATGRTHQIRVHMTT 253

Query: 243 ITHPLVGDQVYGGRPRPPKGA--SEEFISTLRKFDRQALHATMLRLYHPVSGIEMEWHAP 300
             HPLVGD VY GR R  KG     E  + L +F RQALHA +L   HP  G ++ + + 
Sbjct: 254 QGHPLVGDPVY-GRIRGHKGVVLPPEVKTALIQFPRQALHAYLLGFSHPTKGYDVRFESG 312

Query: 301 IPQDMVDLIDAM 312
           +P D+  L+  +
Sbjct: 313 MPLDINALMQIL 324