Pairwise Alignments

Query, 326 a.a., Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 324 a.a., Pseudouridylate synthases, 23S RNA-specific from Kangiella aquimarina DSM 16071

 Score =  351 bits (901), Expect = e-101
 Identities = 178/311 (57%), Positives = 225/311 (72%)

Query: 3   QRVQLTATVSENQLGQRLDQALAEMFPDYSRSRIKEWILNQRVLVNGQLCDKPKEKVLGG 62
           Q + L     E   G+RLD AL++ F DYSRSRI+EWI N  V VNG++    K K+ G 
Sbjct: 4   QSIALRHIFDEKVYGKRLDAALSQQFSDYSRSRIQEWIQNGFVKVNGEVITSNKYKMAGF 63

Query: 63  ERVAIDAEIDEEIRFEAQDIPLDIVYEDDDILVINKPRDLVVHPGAGNPDGTVLNALLHY 122
           E + I+AEI+    ++ + I LDIVYEDD +LVINKP  LVVHPGAGN DGT++NALLH+
Sbjct: 64  EDIEINAEIEVAGEWKPEAIDLDIVYEDDALLVINKPAGLVVHPGAGNQDGTMVNALLHH 123

Query: 123 YPPIADVPRAGIVHRLDKDTTGLMVVAKTVPAQTRLVESLQLREITREYEAVAIGHMTAG 182
            P +A++PRAGI+HR+DK+TTGL+VVAKT+ A T LVE LQ R  TREY+AV    M +G
Sbjct: 124 CPELANLPRAGIIHRIDKETTGLLVVAKTIAAHTNLVEQLQNRAFTREYDAVVNRVMVSG 183

Query: 183 GTVNEPISRHPTKRTHMSVHPMGKPAVTHYRIMEHFRVHTRLRLRLETGRTHQIRVHMAH 242
           GT+++PI RHPTKRT M+V P GK A+THYR++E F  HT L+LRLETGRTHQIRVHMA+
Sbjct: 184 GTIDKPIGRHPTKRTSMAVVPDGKRAITHYRVVEKFLDHTHLKLRLETGRTHQIRVHMAY 243

Query: 243 ITHPLVGDQVYGGRPRPPKGASEEFISTLRKFDRQALHATMLRLYHPVSGIEMEWHAPIP 302
           +  PLVGD +Y GR R P   +     TL  F RQALHA++L L HP SG  +EW AP+P
Sbjct: 244 LKFPLVGDPLYSGRYRVPTRITPILRETLDSFKRQALHASLLGLNHPESGEYIEWRAPLP 303

Query: 303 QDMVDLIDAMR 313
           QDM  L++ +R
Sbjct: 304 QDMSSLLEQLR 314