Pairwise Alignments

Query, 324 a.a., Protein with similarity to RtcB from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 405 a.a., 'RNA-2',3'-PO4:RNA-5'-OH ligase' transl_table=11 from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  105 bits (263), Expect = 1e-27
 Identities = 101/344 (29%), Positives = 147/344 (42%), Gaps = 83/344 (24%)

Query: 22  IEDSAIQQLYTTAKLTGM-KRVIGMPDLHPGRGYPIGAAFFSRGRFYPALVGNDIGCGMA 80
           +ED A QQL  TAK+  + K +  MPD+H G+G  IG+   ++G   PA VG DIGCGM 
Sbjct: 23  VEDDARQQLINTAKMPFIFKHIAVMPDVHLGKGSTIGSVIPTKGAIIPAAVGVDIGCGMN 82

Query: 81  LWQTDILGRKYNADKLEKRLASLTDVADA------------------------------- 109
             +T +      A  L + LA L    +A                               
Sbjct: 83  ALRTSL-----TAADLPENLADLRSAIEAAVPHGRTTGRGHRDVGAWGNPPANVNEKWAQ 137

Query: 110 -----QWLEENVPAAMQHHSWRSALGSIGGGNHFAE--LQQVDRIVDADSFALSGLQKAQ 162
                QWL +  P  +  ++++  LG++G GNHF E  L + DR+               
Sbjct: 138 LEAGYQWLTQKYPRFLNTNNYKH-LGTLGTGNHFIEICLDETDRV--------------- 181

Query: 163 LLLLVHSGSRGLGQTI-----------LRRHVEAFSHNGLP---EDSDDARRYLAEHDDA 208
             +++HSGSRG+G  I           ++  +E      L    E S+    YL     A
Sbjct: 182 -WIMLHSGSRGIGNAIGTYFIGLAQQEMQEQLETLPSRDLAYFNEGSEYFDDYLKAVHWA 240

Query: 209 LAFARSNRALIARRILQQLR--AEGEPRLDVA-----HNFVEPCTVAGEAGWLHRKGATP 261
             FA  NR  +    L  L+   E    LD+      HN+V+     GE  ++ RKGA  
Sbjct: 241 QQFASLNREAMMENALAALQRCVEKPSALDMDEINCHHNYVQKEQHFGEEIYVTRKGAVS 300

Query: 262 DGQG-LVIIPGSRGDYSWLVKPVVSEESLFSLAHGANGCVPSVK 304
             +G   IIPGS G  S++V+ + +EES  S +HGA   +   K
Sbjct: 301 ARRGEFGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRVMSRTK 344