Pairwise Alignments

Query, 1289 a.a., IcmF-related protein from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

Subject, 1166 a.a., type VI secretion protein IcmF from Pseudomonas simiae WCS417

 Score =  503 bits (1296), Expect = e-146
 Identities = 385/1248 (30%), Positives = 591/1248 (47%), Gaps = 110/1248 (8%)

Query: 61   WLVNWSMSIIGISVLCLAIGFVTPLLALGDVHPFAPLWVRLTLIGFILLMYALYGLYRLW 120
            +++ W + ++G+  L L I FV PLL +       P   R  LI  +  ++  Y ++R+ 
Sbjct: 7    FMIRWVIPVLGLIALSLIIWFVGPLLDV-----LVPEGRRWALIILVFAVWIAYRVFRII 61

Query: 121  RALRMDEQLLRRFLHPRGEEVPVAGEIKADLRTVNHIVTQAIRQLRQLRVDMPGWRKIFE 180
            +A R   +++R        + P +     +L T+   + +A+  L++ ++         +
Sbjct: 62   QARRQAAEVMRSLAAETPAD-PNSVATAEELTTLRQRMDEALALLKKAKLGG-------D 113

Query: 181  GKRFLYELPWFMVVGSPGDGKTTALLNTGLQFPLAEQMEQTSRILTVPG-GGTLHCDWWF 239
             +R LYELPW++++G PG GKTTAL+N+GL FPLA Q+   +    V G GGT +CDWWF
Sbjct: 114  ERRNLYELPWYVIIGPPGSGKTTALVNSGLHFPLAAQLGAGA----VRGVGGTRNCDWWF 169

Query: 240  TNEAVLIDTAGRYARHDDGGEASAAQRNAGEWQGFLGLLRKHRPGAPLNGVILTLNVADL 299
            T++AVL+DTAGRY   D       A      W GFL LL+K R   P++G  + ++++DL
Sbjct: 170  TDQAVLLDTAGRYTTQDSNSTVDKAA-----WLGFLDLLKKQRSRRPIDGAFIAISLSDL 224

Query: 300  TAQSPAERLAACAALRARLAELRETLGIRFPVYLVVTKMDLLPGFSEYFRTLTSHLRAQI 359
               + AER A  AA+R R+ EL   LG+RFP+YL++TK+DL+PGF E+F  L+   RAQ+
Sbjct: 225  LLGTDAERAAHAAAIRLRIQELYTQLGVRFPIYLMLTKLDLVPGFMEFFDNLSKEERAQV 284

Query: 360  WGFTLPYSRRRKAGDPQALHAACAQELARLTLRLDQGLDTRLQEEYDLKSRQRLYTFPRE 419
            WG T      +    P    A    E A L  RL++ L  RLQ+E D   R  +Y FP++
Sbjct: 285  WGMTFALDDGKNTDSPL---AHLQSEFAGLEQRLNERLVERLQQERDPARRDLIYGFPQQ 341

Query: 420  FAALGEPLLEAIEQIFLDSKFDATQLNNTLRGVFFTSAAQAQADAVADQLSIWQRFVRAI 479
            F AL + L   +E +F  + F+   L   LRGV+FTS  Q        + S   R + A+
Sbjct: 342  FGALKDCLQSFLEGVFKPNAFEERVL---LRGVYFTSGTQ--------EGSPIDRLIGAM 390

Query: 480  KTARGESSASLPHALPDGNRSYFLHDLLTQFIFREAHLVEPN----LQWAWRYRLLRLGG 535
              +       L      G RSYF+  L T   F E  LV  N     +  W  R +    
Sbjct: 391  AQSMNLDRQHLARQSGTG-RSYFIEKLFTAVAFAERGLVGVNPKVERRRKWIARGVLAAT 449

Query: 536  HLLVLVLAFLLWQGMQTSQQTNGDYLNEISARATRLDGDVKAYTGKPAMAPVPALLDSAR 595
              LV+V++ L W     S + N  Y+ ++  +   L   V+  +  PA   + A+L    
Sbjct: 450  VALVVVVSSLWW----VSYRANQAYIAQVDQKVAPLGQTVQNLS--PAQRDILAVLPL-- 501

Query: 596  ELSAWPELDPDAPPLAWRYGLYSVPPVTDSVASLYNRLLDQLLLPPLVKRMEYVLADAIA 655
             L+A   L  D+P  +   GLY    +    AS+Y +LL  +  P LV R+E  L     
Sbjct: 502  -LNAVKNLAGDSPSWSEGLGLYQGDMLEAESASVYRKLLIAVFAPRLVTRIEEQLHGG-- 558

Query: 656  RQDSKAAYDALRIYLLLNLDKDHEDKYNAAEIQSWVINDLG-NSDSVAGFGGRAAVLTHI 714
              +S   Y+ L+ YL+L  D +H   Y+   I++W+  D   N         R A+  H+
Sbjct: 559  -GNSDFLYEGLKAYLML-ADSEH---YDPDFIKAWIALDWDRNLPRDLPADQRQALAGHL 613

Query: 715  EALFDGSRVVHSPYEK-DEALIRQARAFLDGHTSTERIYARALAAMESEAPQEFTLVRAV 773
            ++LF+     H P  + D  LI   R  L      +R+Y R       E   +F L  A 
Sbjct: 614  QSLFER----HPPTARLDPRLIDDLRRQLQQLPVAQRVYDRVKRQKLPEGIPDFRLNEAA 669

Query: 774  GADAGTVFVRSNGAPLDRGVPGIFTREGYRELFDKRLPEFVAAAT-ANDGWVMGRESTPK 832
            G DA  VF R +G PL   + G FT +GYR+ F   L       T A + WV+G E   +
Sbjct: 670  GRDAALVFSRKSGKPLGEPLSGFFTAKGYRQAF--LLSSLNQTGTLAEEQWVLGHEQADQ 727

Query: 833  KLTDSLRSQIPGQEQSVAREVRRLYLTEYARRWQDFLDSIHSINSAGEEGSSGLAYDLQV 892
            +   SL           A +VRRLY  +Y R+W   L  I  +        + +A    V
Sbjct: 728  QNVVSL-----------AADVRRLYFQDYQRQWDALLADIDFV------PITSVAQAADV 770

Query: 893  LRTLASPDSPLMRLGKAVVEQTTLVPPPDPQARQKQLAQRASGNAGKVVQTAKLFQDIHP 952
            LR ++ P SPL +L  AV ++T      D QA ++QLA +     G V +  +    +  
Sbjct: 771  LRVISGPTSPLKKLLVAVAKET------DLQAEERQLAAKGVPVEGGVDKLKERLGSLLG 824

Query: 953  EERLEKTL-------VDDRFAALREVIAGRTDGGQSGGGTMQIASLLTMLNEYYTQLT-- 1003
            +E+            V   FA L  +++      ++ G    I  LLT +N  Y Q++  
Sbjct: 825  QEQPAANAPAAADDPVTAHFAELNSIVS------KNEGEPAAIDGLLTDMNALYVQVSAM 878

Query: 1004 --IADSALAAGTLPARITAADKLQLEAAKLPAPLKNILLDLTKQGTRKINAGTGDVLNTQ 1061
               +  AL          AA ++ L A + P  ++ ++  +    T  +  G  + LN  
Sbjct: 879  VGASGDALLGEAKNQAAAAATRVSLNAERQPPLVQGMVKSVVNSTTNSMMGGVRNQLNAA 938

Query: 1062 MEAMMGDDCRDAIDGRYPFA-DSPQEVSAEDFNRIFASGGVLDAFWSKQLAPLADTASDP 1120
              + + +  R ++ GRYP +  S ++ + +DF + F  GGV+D ++ K L P  DT++  
Sbjct: 939  WVSEVVNVYRQSLAGRYPMSPGSARDATLDDFGQFFGVGGVMDNYFRKYLQPYVDTSAQT 998

Query: 1121 WRYKPTEGNMTLQGPD-LTPFQQAKQIRSVFFNSEGGKKFSWSMQISVVDMDPAIMELVI 1179
            WR++P         P  L  FQ+A  IR  FF + GG +     ++  V MDP I + ++
Sbjct: 999  WRWQPGAAQKLGIAPGVLQTFQRAATIRDAFFRA-GGTQPIVRFELKPVSMDPTITQFLL 1057

Query: 1180 DIDGQVLRYAHGPDRPLKVTWPGPRNGSMAEITASPRIRQDTSTLLTGGPWALFHLLDAG 1239
            D+DGQ L Y HGP RP+ + WP P +  +  I+  P      S +   GPWA F LL+  
Sbjct: 1058 DLDGQQLSYDHGPSRPVAMQWPNPGSIGVVRISIMPPSASGRSGVTLDGPWAWFRLLEQS 1117

Query: 1240 MVQETAVRGRQLVEYDFDGRRVVLEITAGRDFNPVSRELLQNFSCPAR 1287
             +       R  +    DG  +  E+ A   FNP    +L  FS P R
Sbjct: 1118 DLTAGNSPDRFNLRLRVDGASIAYELRANSAFNPFKSRVLSGFSLPER 1165